CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68187	golgi
CDX73082	golgi
CDX85189	golgi
CDX85826	golgi
CDX86448	golgi
CDX96540	golgi
CDY00138	golgi
CDY04011	golgi
CDY20029	golgi
CDY47235	golgi
CDY49114	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28180.1	CDX68187	AT1G74380.1	22665445
AT3G28180.1	CDX73082	AT1G74380.1	22665445
AT3G28180.1	CDX85826	AT1G74380.1	22665445
AT3G28180.1	CDX96540	AT1G74380.1	22665445
AT3G28180.1	CDY49114	AT1G74380.1	22665445
AT3G28180.1	CDX85189	AT3G28180.1	22665445
AT3G28180.1	CDX86448	AT3G28180.1	22665445
AT3G28180.1	CDY00138	AT3G28180.1	22665445
AT3G28180.1	CDY04011	AT3G28180.1	22665445
AT3G28180.1	CDY20029	AT3G28180.1	22665445
AT3G28180.1	CDY47235	AT3G28180.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00138	Canola	cytosol, peroxisome, plasma membrane	95.19	95.19
CDY20029	Canola	plasma membrane	95.4	66.26
CDX85189	Canola	plasma membrane	94.31	65.6
CDX86448	Canola	plasma membrane	94.09	65.45
AT3G28180.1	Thale cress	plasma membrane	95.84	65.08
CDY57881	Canola	extracellular	17.51	64.0
CDY34018	Canola	cytosol, endoplasmic reticulum, plasma membrane	77.46	62.43
CDY47235	Canola	plasma membrane	42.23	59.2
KRH18597	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	84.9	58.79
KRG93391	Soybean	plasma membrane	84.46	58.48
VIT_14s0066g01730.t01	Wine grape	plasma membrane	83.15	57.23
Solyc02g089640.2.1	Tomato	plasma membrane	80.53	56.27
PGSC0003DMT400026046	Potato	plasma membrane	80.31	56.12
CDX76802	Canola	plasma membrane	78.34	54.24
CDX72314	Canola	plasma membrane	80.31	53.66
CDY13445	Canola	plasma membrane	80.09	53.28
CDY34762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	78.56	52.49
CDX83148	Canola	plasma membrane	77.46	51.16
CDX75177	Canola	cytosol	31.29	49.14
CDY08003	Canola	cytosol, peroxisome, plasma membrane	71.77	47.19
CDY47369	Canola	plasma membrane	30.85	47.0
CDX74051	Canola	cytosol, peroxisome, plasma membrane	71.77	46.92
CDX68766	Canola	plasma membrane	79.43	46.84
CDX69464	Canola	cytosol, peroxisome, plasma membrane	43.33	44.7
CDX70677	Canola	cytosol, peroxisome, plasma membrane	43.33	44.7
CDY60854	Canola	plasma membrane	79.43	41.49
CDY32110	Canola	mitochondrion	39.82	41.36
CDY09672	Canola	golgi	30.85	40.06
CDX70286	Canola	plasma membrane	46.17	39.66
CDY10358	Canola	plasma membrane	46.17	39.66
CDY11268	Canola	plasma membrane	46.17	39.66
CDY47368	Canola	endoplasmic reticulum, extracellular	5.03	39.66
CDX78675	Canola	plasma membrane	43.33	39.29
CDY35710	Canola	plasma membrane	43.33	38.75
CDY09164	Canola	plasma membrane	43.11	38.63
CDY68733	Canola	plasma membrane	22.98	38.6
CDY26505	Canola	plasma membrane	43.33	38.6
CDY01129	Canola	plasma membrane	45.08	38.29
CDX88785	Canola	plasma membrane	42.67	38.24
CDX71011	Canola	plasma membrane	42.67	38.24
CDY26949	Canola	plasma membrane	42.67	38.24
CDX79614	Canola	plasma membrane	45.51	37.75
CDY44151	Canola	plasma membrane	45.51	37.48
CDY04707	Canola	plasma membrane	45.51	37.48
CDY32098	Canola	plasma membrane	44.42	37.38
CDX72181	Canola	plasma membrane	42.67	37.28
CDY54604	Canola	plasma membrane	42.23	36.83
CDY40295	Canola	plasma membrane	42.45	35.53
CDY32100	Canola	cytosol	1.31	35.29
CDX90506	Canola	plasma membrane	42.67	35.26
CDY40448	Canola	plasma membrane	44.86	34.63
CDX80885	Canola	plasma membrane	37.2	32.38
CDX84607	Canola	mitochondrion	7.88	30.0
CDX92340	Canola	plasma membrane	43.11	20.85

Protein Annotations

EnsemblPlants:CDY04011	EnsemblPlantsGene:GSBRNA2T00117563001	Gene3D:3.90.550.10	GO:A0A078ES07	InterPro:Glyco_trans_2-like	InterPro:IPR029044
InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF11	PFAM:PF13632	ProteinID:CDY04011	ProteinID:CDY04011.1
SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0004EDD9B3	MapMan:21.2.1.1.1	:

Description

BnaC02g37260D

Coordinates

chrLK031948:+:360622..362847

Molecular Weight (calculated)

52713.4 Da

IEP (calculated)

7.236

GRAVY (calculated)

0.047

Length

457 amino acids

Sequence
(BLAST)

001: MVLIQIPMCN EREVYEQSIG AASQLDWPKD RILIQVLDDS DDPNLQLLIE EEVSVWAEKG VNIIYRHRLI RTGYKAGNLK SAMTCDYVKD YEFVAIFDAD
101: FTPNPDFLKK TIPHFKRNPE LGLVQARWSF VNKDENLLTR LQNINLCFHF EVEQQVSGVF LNFFGFNGTA GVWRIKALEE SGGWLERTTV EDMDIAVRAH
201: LNGWKFIYLN DVEVTCELPE SYEAYKKQQH RWHSGPMQLF RLCLPSIIKS KISIGKKANL IFLFFLLRKL ILPFYSFTLF CIILPLTMFI PEAELPLWII
301: CYVPIFISLL NILPSPKSFP FLIPYLLFEN TMSITKFNAM ISGLFQLGSA YEWVVTKKTG RSSESDLLAF SEKEEKLHRR NSESETEKES IGGLMRSNSK
401: MKKRNMVFKK ELGLAFLLLT AAARSFLSAH GLHFYFLLFQ GLSFLVVGLD LIGEQIN

Best Arabidopsis Sequence Match ( AT2G24630.1 )
(BLAST)

001: MAPRFDFSDL WAKETRRGTP VVVKMENPNY SIVEVEEPDS AFQPMEKSRG KNAKQVTWVL LLKAHKAVGC LTWVATVFWS LLGSVKRRLS FTHPLGSERL
101: GRDGWLFSAI KLFLVASLAI LAFELVAYYR GWHYFKNPNL HIPTSKLEIQ SLLHLFYVGW LSLRADYIAP PIKALSKFCI VLFLVQSVDR LILCLGCLWI
201: KFKKIKPRID EEHFRNDDFE GSGSEYPMVL VQIPMCNERE VYEQSISAVC QLDWPKDRLL VQVLDDSDDE SIQELIRDEV TKWSQKGVNI IYRHRLVRTG
301: YKAGNLKSAM SCDYVEAYEF VAIFDADFQP NSDFLKLTVP HFKEKPELGL VQARWAFVNK DENLLTRLQN INLCFHFEVE QQVNGVFLNF FGFNGTAGVW
401: RIKALEESGG WLERTTVEDM DIAVRAHLHG WKFIYLNDVK VLCEVPESYE AYKKQQHRWH SGPMQLFRLC LRSILTSKIA MWKKANLILL FFLLRKLILP
501: FYSFTLFCVI LPITMFVPEA ELPIWVICYV PIFMSLLNIL PAPKSFPFIV PYLLFENTMS VTKFNAMVSG LFQLGSSYEW IVTKKAGRSS ESDLLALTDK
601: ESEKMPNQIL RGVSDSELLE ISQVEEQKKQ PVSVKKTNKI FHKELALAFL LLTAAVRSLL ASQGVHFYFL LFQGLTFLLV GLDLIGEQMS

Arabidopsis Description

CSLC8Probable xyloglucan glycosyltransferase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA2]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.