Factsheet for VIT_08s0040g01340.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

cytosol 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009922	Potato	plasma membrane	43.33	85.6
KRH67729	Soybean	plasma membrane	78.75	71.73
VIT_13s0074g00500.t01	Wine grape	plasma membrane	66.88	71.49
KRG96022	Soybean	plasma membrane	78.33	71.21
GSMUA_AchrUn_...	Banana	plasma membrane	72.5	66.16
TraesCS1A01G010500.1	Wheat	extracellular, plasma membrane	55.83	63.06
VIT_08s0007g03990.t01	Wine grape	cytosol, peroxisome, plasma membrane	70.62	62.78
Zm00001d043714_P001	Maize	cytosol	48.75	60.0
VIT_06s0061g01230.t01	Wine grape	plasma membrane	65.83	59.29
Zm00001d043716_P001	Maize	mitochondrion, plasma membrane	64.79	57.91
TraesCS2D01G532800.1	Wheat	plasma membrane	62.5	57.03
TraesCS2A01G530900.1	Wheat	golgi	62.5	56.93
Zm00001d043719_P001	Maize	plasma membrane	23.33	56.85
TraesCS2B01G560100.1	Wheat	golgi	62.29	56.63
OQU89056	Sorghum	mitochondrion, plasma membrane	64.17	56.0
Zm00001d005305_P001	Maize	plasma membrane	26.04	55.31
TraesCS7D01G544700.1	Wheat	golgi	59.17	54.62
TraesCS7B01G494000.1	Wheat	golgi	59.17	54.2
HORVU4Hr1G000610.1	Barley	endoplasmic reticulum, plasma membrane, plastid	62.71	51.37
Os09t0572500-01	Rice	golgi, mitochondrion, plasma membrane, plastid	44.58	39.56
VIT_14s0066g01730.t01	Wine grape	plasma membrane	43.96	31.78
VIT_18s0001g08580.t01	Wine grape	cytosol, peroxisome, plasma membrane	45.42	31.19
VIT_09s0018g01950.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	44.79	31.02
VIT_04s0069g00780.t01	Wine grape	plasma membrane	44.38	30.69
VIT_00s0580g00010.t01	Wine grape	plasma membrane, plastid	42.71	27.22

Protein Annotations

EntrezGene:100263604	wikigene:100263604	MapMan:21.2.3.1.1.1	Gene3D:3.90.550.10	EMBL:AM454625	ProteinID:CAN74410
ProteinID:CAN74410.1	ProteinID:CCB57105	ProteinID:CCB57105.1	UniProt:F6HR56	EMBL:FN596008	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR029044	EntrezGene:LOC100263604	wikigene:LOC100263604	InterPro:Nucleotide-diphossugar_trans
PFAM:PF13641	PANTHER:PTHR32044	PANTHER:PTHR32044:SF27	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0002109374
ArrayExpress:VIT_08s0040g01340	EnsemblPlantsGene:VIT_08s0040g01340	EnsemblPlants:VIT_08s0040g01340.t01	RefSeq:XP_002277171	RefSeq:XP_002277171.1	SEG:seg

Description

No Description!

Coordinates

chr8:+:12410662..12416243

Molecular Weight (calculated)

55752.6 Da

IEP (calculated)

9.216

GRAVY (calculated)

0.088

Length

480 amino acids

Sequence
(BLAST)

001: MSIMLFIERV YMAIIILCVK VMRKKRYTKY KLDTMKEDLE LNKSYPKVLI QIPMYNEKEV YKLSIGAACS VSWPSDRFII QVLDDSTNEA LRVMVELECR
101: KWIDKGVNVK YETRNNRNGY KAGALREGLQ KQYVEDCEFV AIFDADFQPE ENFLWRTIPF LLENPGLGLV QARWKFVNAD ECLMTRLQEM SLDYHFSVEQ
201: EVGSSTCSFF GFNGTAGVWR IQAINDAGGW KDRTTVEDMD LAVRASLKGW KFLFVGDLSV KNELPSTFKA YRYQQHRWSC GPANLFRKMT KEIILCEKVS
301: TWKKFHVIYA FFFVRKIIAH WVTFFFYCVV IPLSVLVPEV ALPKPIAIYI PATITFLNAV CTPRSLHLVV FWILFENVMS LHRTKAAIIG LLEANRVNEW
401: VVTEKLGNLM KQKNAKASKK SRSRVGERIH LLELIMGMFM LHCAIYNLLF REDHFFIYLI LQAGAFFIMG FGYVGTFVSN

Best Arabidopsis Sequence Match ( AT5G03760.1 )
(BLAST)

001: MELGDTTSVI PDSFMGYRDD ITMQMSMVLD QIRAPLIVPA LRLGVYICLT MSVMLFVERV YMGIVISLVK LFGRKPDKRF KYEPIKDDIE LGNSAYPMVL
101: IQIPMFNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY
401: IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA
501: FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH

Arabidopsis Description

CSLA9RAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UH35]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.