CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81360
CDY01457
CDY04081
CDY12784
CDY16414
CDY18621
CDY22597
CDY38575
CDY41739
CDY43007
CDY44389
CDY46781
CDY49845
CDY52150
CDY60257
CDY67026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37630.1	CDY22597	AT1G32230.1	19548978
AT2G37630.1	CDY41739	AT1G32230.1	19548978
AT2G37630.1	CDY43007	AT1G32230.1	19548978
AT2G37630.1	CDY60257	AT1G32230.1	19548978
AT2G37630.1	CDY67026	AT1G32230.1	19548978
AT2G37630.1	CDY16414	AT1G65620.1	19228338
AT2G37630.1	CDY46781	AT1G65620.1	19228338
AT2G37630.1	CDY04081	AT3G29390.1	16243907
AT2G37630.1	CDY38575	AT3G29390.1	16243907
AT2G37630.1	CDY44389	AT3G29390.1	16243907
AT2G37630.1	CDX81360	AT5G66870.1	16243907
AT2G37630.1	CDY01457	AT5G66870.1	16243907
AT2G37630.1	CDY12784	AT5G66870.1	16243907
AT2G37630.1	CDY18621	AT5G66870.1	16243907
AT2G37630.1	CDY49845	AT5G66870.1	16243907
AT2G37630.1	CDY52150	AT5G66870.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74943	Canola	nucleus	98.04	95.63
CDY07778	Canola	nucleus	89.64	92.22
CDX79747	Canola	nucleus	88.8	91.09
AT2G37630.1	Thale cress	nucleus	91.04	88.56
VIT_08s0007g00410.t01	Wine grape	nucleus	71.43	71.23
Solyc09g010840.1.1	Tomato	nucleus	69.19	68.61
PGSC0003DMT400022771	Potato	nucleus	68.63	67.87
KRG99949	Soybean	nucleus	67.79	67.79
GSMUA_Achr7P10550_001	Banana	nucleus	57.14	66.67
KRH49100	Soybean	nucleus	67.23	66.48
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	30.53	65.66
KRH66092	Soybean	nucleus	64.15	64.15
GSMUA_Achr9P28330_001	Banana	nucleus	57.42	63.66
KRG99521	Soybean	nucleus	62.75	63.64
TraesCS5A01G079100.1	Wheat	nucleus	57.98	60.35
GSMUA_Achr9P03320_001	Banana	nucleus	44.82	57.97
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	58.54	57.73
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	58.26	57.62
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	58.54	57.58
Os12t0572000-01	Rice	nucleus	54.34	56.73
Zm00001d030737_P001	Maize	nucleus	54.62	52.7
EES17234	Sorghum	nucleus	55.46	51.97
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	33.89	41.02
CDX93535	Canola	nucleus	8.68	37.35
GSMUA_Achr5P29070_001	Banana	nucleus	59.66	36.22
CDX95030	Canola	nucleus	11.48	35.96
HORVU6Hr1G071420.2	Barley	plastid	16.53	32.07
CDY31125	Canola	nucleus	15.41	20.75
CDY32135	Canola	nucleus	15.13	20.22
CDY30719	Canola	nucleus	14.85	19.78
CDY04044	Canola	nucleus	17.37	19.75
CDY00289	Canola	nucleus	14.85	19.13
CDX86406	Canola	nucleus	17.65	18.92
CDX85227	Canola	nucleus	17.65	18.92
CDX86405	Canola	nucleus	17.65	18.92
CDY44428	Canola	nucleus	17.09	18.71
CDY16773	Canola	nucleus	15.41	18.64
CDY00107	Canola	nucleus	17.65	18.64
CDX85848	Canola	nucleus	16.81	18.52
CDX68173	Canola	nucleus	16.53	18.27
CDX96557	Canola	nucleus	16.81	18.02
CDY69264	Canola	nucleus	16.53	17.77
CDX73103	Canola	nucleus	16.25	17.52
CDX87250	Canola	nucleus	16.25	17.31
CDY64733	Canola	nucleus	3.92	6.76
CDX95031	Canola	nucleus, plastid	2.24	5.16

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078DS75	EnsemblPlants:CDX91374	ProteinID:CDX91374	ProteinID:CDX91374.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0010338
EnsemblPlantsGene:GSBRNA2T00152674001	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF13921	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF457	InterPro:RS2/AS1	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0004EC4C47	SEG:seg	:	:	:	:

Description

BnaC04g07760D

Coordinates

chrLK031867:-:414435..416175

Molecular Weight (calculated)

41335.4 Da

IEP (calculated)

9.904

GRAVY (calculated)

-0.968

Length

357 amino acids

Sequence
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSSVPAVMAS SNGGFQQAPP PPNNNHVIPP WLATSNNGNN VVARPPSVTL TLSPSVAATP
201: PQQPIPWLQQ QQPEASPGGL VLGSMIPSCS GSNESVFMSE LVECCRELEE GHRAWAEHKK EAAWRLRRLE LQLESEKTSR QREKAEEIEA KMKALREEQK
301: MAMEKIEGEY REQLVGLRRD AEAKDQKLAD QWTSKHIRLT KFLEQHIGCR QRLLDRP

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.