CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74943
CDX79747
CDX91374
CDY07778

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G29390.1	CDX74943	AT2G37630.1	16243907
AT3G29390.1	CDX79747	AT2G37630.1	16243907
AT3G29390.1	CDX91374	AT2G37630.1	16243907
AT3G29390.1	CDY07778	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036212.1-P	Field mustard	cytosol	69.32	78.21
CDY44389	Canola	nucleus	59.09	23.11
CDY04081	Canola	nucleus	58.52	19.0
AT3G29390.1	Thale cress	nucleus	56.25	17.13
KRH45025	Soybean	nucleus	51.14	14.0
KRH01276	Soybean	nucleus	51.14	13.8
PGSC0003DMT400064730	Potato	nucleus	45.45	13.51
Solyc02g066940.2.1	Tomato	nucleus	45.45	13.49
VIT_14s0068g00240.t01	Wine grape	nucleus	46.59	12.44
TraesCS4B01G247400.2	Wheat	cytosol	40.91	12.02
TraesCS4D01G246700.1	Wheat	nucleus	40.91	11.84
TraesCS4A01G057600.3	Wheat	cytosol, endoplasmic reticulum, nucleus	41.48	11.83
KXG39878	Sorghum	nucleus	44.89	11.74
Zm00001d028208_P009	Maize	nucleus	44.89	11.67
GSMUA_AchrUn_...	Banana	nucleus	2.27	4.49
HORVU4Hr1G067960.4	Barley	endoplasmic reticulum, extracellular	6.25	2.39
Os03t0213900-02	Rice	cytosol, nucleus	2.27	1.04

Protein Annotations

EnsemblPlants:CDY38575	EnsemblPlantsGene:GSBRNA2T00066249001	GO:A0A078HJF2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	PANTHER:PTHR15744
ProteinID:CDY38575	ProteinID:CDY38575.1	UniParc:UPI0004EE2EBA	UniProt:A0A078HJF2	MapMan:35.1	:

Description

BnaA05g13040DBnaA05g13040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJF2]

Coordinates

chrLK032426:-:313580..314656

Molecular Weight (calculated)

19623.3 Da

IEP (calculated)

10.323

GRAVY (calculated)

0.023

Length

176 amino acids

Sequence
(BLAST)

001: MALASLIFKA VVPGLGGAKL NFKNLGVVQQ QICLQLSLLN SVTPNNCKFR KRNWDQLVAC RIRDELIIAR EIVINDAEAS LRHKLTLRST QEEIQRCTGA
101: VVITRGKYRF LNAPLDGEKP LYLHISAASH LKETTERILA VDRAAAMIEE MMRQKPSSQL GVVGFHTVKV RIVSSC

Best Arabidopsis Sequence Match ( AT3G29390.2 )
(BLAST)

001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQVKNILYPR

Arabidopsis Description

RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.