Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P24580_001 | Banana | nucleus | 56.18 | 9.67 |
| CDY44389 | Canola | nucleus | 47.19 | 9.33 |
| HORVU4Hr1G067960.4 | Barley | endoplasmic reticulum, extracellular | 44.94 | 8.68 |
| Bra033103.1-P | Field mustard | nucleus | 47.19 | 7.57 |
| CDY04081 | Canola | nucleus | 44.94 | 7.38 |
| AT3G29390.1 | Thale cress | nucleus | 44.94 | 6.92 |
| KRH45025 | Soybean | nucleus | 48.31 | 6.69 |
| KRH01276 | Soybean | nucleus | 48.31 | 6.6 |
| PGSC0003DMT400064730 | Potato | nucleus | 43.82 | 6.59 |
| Solyc02g066940.2.1 | Tomato | nucleus | 43.82 | 6.58 |
| TraesCS4B01G247400.2 | Wheat | cytosol | 41.57 | 6.18 |
| VIT_14s0068g00240.t01 | Wine grape | nucleus | 44.94 | 6.07 |
| Zm00001d028208_P009 | Maize | nucleus | 46.07 | 6.06 |
| TraesCS4A01G057600.3 | Wheat | cytosol, endoplasmic reticulum, nucleus | 41.57 | 6.0 |
| KXG39878 | Sorghum | nucleus | 44.94 | 5.94 |
| TraesCS4D01G246700.1 | Wheat | nucleus | 40.45 | 5.92 |
| Os03t0213900-02 | Rice | cytosol, nucleus | 19.1 | 4.44 |
| CDY38575 | Canola | extracellular, mitochondrion, plastid | 4.49 | 2.27 |
| Bra036212.1-P | Field mustard | cytosol | 2.25 | 1.28 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP09860_001 | EnsemblPlants:GSMUA_AchrUn_randomT09860_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG09860_001 | Gene3D:3.30.1370.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom_type_1_sf | SEG:seg | UniParc:UPI00029538C8 |
| UniProt:M0U7U6 | MapMan:35.2 | : | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG09860_001]
Coordinates
chrchrUn_random:-:47656023..47656636
Molecular Weight (calculated)
10002.9 Da
IEP (calculated)
4.342
GRAVY (calculated)
0.033
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MQPSCINLVV DSSAESSSQS SFWDLFELDL YINHIMNEAG ATVVLRGRES EHHDLPLQPL HLSLLSTNPK SLEVAKILPE NLLDSFLWI
001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQVKNILYPR
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQVKNILYPR
Arabidopsis Description
RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.