Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000011.1-P | |
| Bra005177.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G29390.1 | Bra000011.1-P | AT2G37630.1 | 16243907 |
| AT3G29390.1 | Bra005177.1-P | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44389 | Canola | nucleus | 80.36 | 99.11 |
| Bra036212.1-P | Field mustard | cytosol | 20.0 | 71.15 |
| AT3G29390.1 | Thale cress | nucleus | 70.63 | 67.82 |
| GSMUA_AchrUn_... | Banana | nucleus | 7.57 | 47.19 |
| PGSC0003DMT400064730 | Potato | nucleus | 48.65 | 45.61 |
| KRH45025 | Soybean | nucleus | 52.79 | 45.57 |
| Solyc02g066940.2.1 | Tomato | nucleus | 48.29 | 45.19 |
| KRH01276 | Soybean | nucleus | 52.79 | 44.94 |
| VIT_14s0068g00240.t01 | Wine grape | nucleus | 52.25 | 44.01 |
| TraesCS4B01G247400.2 | Wheat | cytosol | 42.7 | 39.57 |
| TraesCS4D01G246700.1 | Wheat | nucleus | 42.88 | 39.14 |
| TraesCS4A01G057600.3 | Wheat | cytosol, endoplasmic reticulum, nucleus | 43.06 | 38.74 |
| KXG39878 | Sorghum | nucleus | 45.59 | 37.59 |
| Zm00001d028208_P009 | Maize | nucleus | 45.23 | 37.08 |
| HORVU4Hr1G067960.4 | Barley | endoplasmic reticulum, extracellular | 29.01 | 34.92 |
| Os03t0213900-02 | Rice | cytosol, nucleus | 20.18 | 29.24 |
Protein Annotations
| EnsemblPlants:Bra033103.1 | EnsemblPlants:Bra033103.1-P | EnsemblPlantsGene:Bra033103 | Gene3D:3.30.1370.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:IPR036612 | InterPro:KH_dom_type_1_sf | SEG:seg | SUPFAM:SSF54791 | UniParc:UPI0002546E40 | UniProt:M4EWB9 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT3G29390 (E=2e-178) RIK | RIK (RS2-Interacting KH protein); RNA binding
Coordinates
chrA02:-:21394177..21398902
Molecular Weight (calculated)
59815.3 Da
IEP (calculated)
9.436
GRAVY (calculated)
-0.555
Length
555 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDKCDEARV PPSDSATTND ASRTRQRRKR KWDQPAEQLV AAGVVLPRLG NAAINVPPAA TNTVAPFFQT PLPKLIQDEL TIAREIVIND AEASLRHKLT
101: KRSTQEEIQR STGAVVITRG KYRPPNAPPD GEKPLYLHIS AAAHLKETTE RILAVDRAAA MIEEMMKQKT NSQVGLVGSP TVKMLNTCVY LGFEADPSSN
201: VAARIRGPND QYINHIMNET GATVVLRGRG SGNLENQHGE EAQQPLHLLL SSSNPKSIDD AKRLAENLMD TISVEFGASR VSSSKVYGAV PPPQQLLAGA
301: PIPETAQKPN LSSSYGLMTS PNAVNPFPVP PATTTLYPQF PVFQPPGISN GGHLRPSPVS YLQPAAGGTS YSGYAGIYPQ ATPLQQVAQV LKQSVTPVVS
401: TVPPTLLTSA ALSKPSGIPS KETERRPPQK RKFQELPADC KVPAKSKEKS ESAMAGEVAP KNIREPTANG VGSLPSQRSM MPPPPPKTIQ PPPSRDVSPP
501: SSRTMLPPPP RFTPSKQPPA PRLQEDQITI KKPNPVPDTL IKLMEYGDDD DDDED
101: KRSTQEEIQR STGAVVITRG KYRPPNAPPD GEKPLYLHIS AAAHLKETTE RILAVDRAAA MIEEMMKQKT NSQVGLVGSP TVKMLNTCVY LGFEADPSSN
201: VAARIRGPND QYINHIMNET GATVVLRGRG SGNLENQHGE EAQQPLHLLL SSSNPKSIDD AKRLAENLMD TISVEFGASR VSSSKVYGAV PPPQQLLAGA
301: PIPETAQKPN LSSSYGLMTS PNAVNPFPVP PATTTLYPQF PVFQPPGISN GGHLRPSPVS YLQPAAGGTS YSGYAGIYPQ ATPLQQVAQV LKQSVTPVVS
401: TVPPTLLTSA ALSKPSGIPS KETERRPPQK RKFQELPADC KVPAKSKEKS ESAMAGEVAP KNIREPTANG VGSLPSQRSM MPPPPPKTIQ PPPSRDVSPP
501: SSRTMLPPPP RFTPSKQPPA PRLQEDQITI KKPNPVPDTL IKLMEYGDDD DDDED
001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
Arabidopsis Description
RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.