CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74943
CDX79747
CDX91374
CDY07778

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G29390.1	CDX74943	AT2G37630.1	16243907
AT3G29390.1	CDX79747	AT2G37630.1	16243907
AT3G29390.1	CDX91374	AT2G37630.1	16243907
AT3G29390.1	CDY07778	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033103.1-P	Field mustard	nucleus	99.11	80.36
CDY04081	Canola	nucleus	89.33	74.17
AT3G29390.1	Thale cress	nucleus	76.0	59.17
CDY38575	Canola	extracellular, mitochondrion, plastid	23.11	59.09
GSMUA_AchrUn_...	Banana	nucleus	9.33	47.19
KRH45025	Soybean	nucleus	58.44	40.9
PGSC0003DMT400064730	Potato	nucleus	52.89	40.2
KRH01276	Soybean	nucleus	58.22	40.18
Solyc02g066940.2.1	Tomato	nucleus	52.22	39.63
VIT_14s0068g00240.t01	Wine grape	nucleus	56.67	38.7
TraesCS4B01G247400.2	Wheat	cytosol	46.22	34.72
TraesCS4D01G246700.1	Wheat	nucleus	46.22	34.21
TraesCS4A01G057600.3	Wheat	cytosol, endoplasmic reticulum, nucleus	46.44	33.87
Zm00001d028208_P009	Maize	nucleus	48.0	31.91
KXG39878	Sorghum	nucleus	47.11	31.5
HORVU4Hr1G067960.4	Barley	endoplasmic reticulum, extracellular	28.22	27.55
Os03t0213900-02	Rice	cytosol, nucleus	18.89	22.19

Protein Annotations

Gene3D:3.30.1370.10	MapMan:35.1	GO:A0A078I4B8	UniProt:A0A078I4B8	EnsemblPlants:CDY44389	ProteinID:CDY44389
ProteinID:CDY44389.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00080059001	InterPro:IPR036612	InterPro:KH_dom_type_1_sf
PANTHER:PTHR15744	SUPFAM:SSF54791	UniParc:UPI0004EEA2F0	SEG:seg	:	:

Description

BnaA02g29880DBnaA02g29880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4B8]

Coordinates

chrLK032588:-:41397..45028

Molecular Weight (calculated)

48507.9 Da

IEP (calculated)

9.828

GRAVY (calculated)

-0.417

Length

450 amino acids

Sequence
(BLAST)

001: MTDKCDEARV PPSDSATTND ASRTRQRRKR KWDQPAEQLV AAGVVLPRLG NAINVPPAAT NTVAPFFQTP LPKLIQDELT IAREIVINDA EASLRHKLTK
101: RSTQEEIQRS TGAVVITRGK YRPPNAPPDG EKPLYLHISA AAHLKETTER ILAVDRAAAM IEEMMKQKTN SQVGLVGSPT VKMLNTCVYL GFEADPSSNV
201: AARIRGPNDQ YINHIMNETG ATVVLRGRGS GNLENQHGEE AQQPLHLLLS SSNPKSIDDA KRLAENLMDT ISVEFGASRV SSSKVYGAVP PPQQLLAGAP
301: IPETAQKPNL SSSYGLMTSP NAVNPFPVPP ATTTLYPQFP VFQPPGISNG GHLRPSPVSY LQPAAGGTSY SGYAGIYPQA TPLQQVAQVL KQSVTPVVST
401: VPPTLLTSAA LSKPSGIPSK ETERRPPQKR KFQELPADCK VPAKSKEVFF

Best Arabidopsis Sequence Match ( AT3G29390.2 )
(BLAST)

001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQVKNILYPR

Arabidopsis Description

RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.