Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G29390.1 | KRG99521 | AT2G37630.1 | 16243907 |
| AT3G29390.1 | KRG99949 | AT2G37630.1 | 16243907 |
| AT3G29390.1 | KRH49100 | AT2G37630.1 | 16243907 |
| AT3G29390.1 | KRH66092 | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH45025 | Soybean | nucleus | 90.03 | 91.29 |
| Bra036212.1-P | Field mustard | cytosol | 14.72 | 61.54 |
| CDY44389 | Canola | nucleus | 40.18 | 58.22 |
| VIT_14s0068g00240.t01 | Wine grape | nucleus | 57.21 | 56.6 |
| PGSC0003DMT400064730 | Potato | nucleus | 48.93 | 53.89 |
| CDY04081 | Canola | nucleus | 44.79 | 53.87 |
| Solyc02g066940.2.1 | Tomato | nucleus | 48.62 | 53.46 |
| Bra033103.1-P | Field mustard | nucleus | 44.94 | 52.79 |
| CDY38575 | Canola | extracellular, mitochondrion, plastid | 13.8 | 51.14 |
| AT3G29390.1 | Thale cress | nucleus | 44.79 | 50.52 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.6 | 48.31 |
| TraesCS4B01G247400.2 | Wheat | cytosol | 41.87 | 45.58 |
| TraesCS4D01G246700.1 | Wheat | nucleus | 42.33 | 45.39 |
| TraesCS4A01G057600.3 | Wheat | cytosol, endoplasmic reticulum, nucleus | 42.48 | 44.89 |
| KXG39878 | Sorghum | nucleus | 44.17 | 42.79 |
| Zm00001d028208_P009 | Maize | nucleus | 44.17 | 42.54 |
| HORVU4Hr1G067960.4 | Barley | endoplasmic reticulum, extracellular | 25.61 | 36.23 |
| Os03t0213900-02 | Rice | cytosol, nucleus | 20.71 | 35.25 |
Protein Annotations
| EntrezGene:100806616 | Gene3D:3.30.1370.10 | MapMan:35.1 | EMBL:ACUP02011509 | EnsemblPlantsGene:GLYMA_18G266400 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | UniProt:I1N4J7 | InterPro:IPR036612 | InterPro:KH_dom_type_1_sf | EnsemblPlants:KRH01276 | ProteinID:KRH01276 |
| ProteinID:KRH01276.1 | PANTHER:PTHR15744 | SUPFAM:SSF54791 | UniParc:UPI000295AD99 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr18:+:55076548..55086297
Molecular Weight (calculated)
69072.6 Da
IEP (calculated)
8.440
GRAVY (calculated)
-0.288
Length
652 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEDSIVRVS SSNETSAANE ASQTRQRKKR KWDQPAESLM PVGMTVPGAL PLSNAVTLGG VAFPAMAPVI SGTLLTNPLA ASAQLPQHAA AAAVAAQKLN
101: QHKIQDELII AREIVINDAE SSVRYKLTKR QTQEEIQRCT GAIVITRGKY RLPNAPHDGE KPLYLHISAG AHIKETAERI LAVDRAAAMI EEILKQVQNS
201: QSISSVTPSA LVNGVKMLST CVFLGFDADP SLNIVARIRG PNDQYINHIM NETGATVVLR GRGSGNNECL NGEDGQQPLH LFLSSNNAKS LEDAKLLAEN
301: LLDTICTECG ASRVSSCKVY SAVPPPQQAY TAVPPPQQVY SAVPPPQQVY SGPSLLKQIP AAISPPQVYS AVPPPQQLLT GVQSSGIDLE AGASLITSSM
401: SAAGVLTPVP PASLVGVTGV TGALTLGTTP QSIRHLSSGP QANMTGYTPP PLVSGGTSYI GYGGLYPQAT PLQQVALALR HSPPVASTVA PTTSASNRGS
501: KSTLSSDLEK EKRPPQRRKF QELPVGSKDT TKLNQRLQPL KTNEQSDGPV VRNISTMPAP KKLVQPSSNG MPPPLLRTMP PPPPPPKFCG PSEVKVQAKN
601: KTLLKTKSDA VPDTLVKLME YGEEDDDDID SSEESLPHDA GATGVQKPFW AL
101: QHKIQDELII AREIVINDAE SSVRYKLTKR QTQEEIQRCT GAIVITRGKY RLPNAPHDGE KPLYLHISAG AHIKETAERI LAVDRAAAMI EEILKQVQNS
201: QSISSVTPSA LVNGVKMLST CVFLGFDADP SLNIVARIRG PNDQYINHIM NETGATVVLR GRGSGNNECL NGEDGQQPLH LFLSSNNAKS LEDAKLLAEN
301: LLDTICTECG ASRVSSCKVY SAVPPPQQAY TAVPPPQQVY SAVPPPQQVY SGPSLLKQIP AAISPPQVYS AVPPPQQLLT GVQSSGIDLE AGASLITSSM
401: SAAGVLTPVP PASLVGVTGV TGALTLGTTP QSIRHLSSGP QANMTGYTPP PLVSGGTSYI GYGGLYPQAT PLQQVALALR HSPPVASTVA PTTSASNRGS
501: KSTLSSDLEK EKRPPQRRKF QELPVGSKDT TKLNQRLQPL KTNEQSDGPV VRNISTMPAP KKLVQPSSNG MPPPLLRTMP PPPPPPKFCG PSEVKVQAKN
601: KTLLKTKSDA VPDTLVKLME YGEEDDDDID SSEESLPHDA GATGVQKPFW AL
001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
Arabidopsis Description
RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.