Factsheet for Bra036212.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000011.1-P
Bra005177.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G29390.1	Bra000011.1-P	AT2G37630.1	16243907
AT3G29390.1	Bra005177.1-P	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38575	Canola	extracellular, mitochondrion, plastid	78.21	69.32
Bra033103.1-P	Field mustard	nucleus	71.15	20.0
AT3G29390.1	Thale cress	nucleus	68.59	18.51
KRH45025	Soybean	nucleus	62.18	15.09
KRH01276	Soybean	nucleus	61.54	14.72
PGSC0003DMT400064730	Potato	nucleus	55.13	14.53
Solyc02g066940.2.1	Tomato	nucleus	55.13	14.5
VIT_14s0068g00240.t01	Wine grape	nucleus	55.13	13.05
TraesCS4B01G247400.2	Wheat	cytosol	48.08	12.52
TraesCS4A01G057600.3	Wheat	cytosol, endoplasmic reticulum, nucleus	48.72	12.32
TraesCS4D01G246700.1	Wheat	nucleus	47.44	12.17
KXG39878	Sorghum	nucleus	51.28	11.89
Zm00001d028208_P009	Maize	nucleus	51.28	11.82
GSMUA_AchrUn_...	Banana	nucleus	1.28	2.25
HORVU4Hr1G067960.4	Barley	endoplasmic reticulum, extracellular	5.13	1.74
Os03t0213900-02	Rice	cytosol, nucleus	1.28	0.52

Protein Annotations

EnsemblPlants:Bra036212.1	EnsemblPlants:Bra036212.1-P	EnsemblPlantsGene:Bra036212	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	PANTHER:PTHR15744
UniParc:UPI0002541DE7	UniProt:M4F556	MapMan:35.1	:	:	:

Description

AT3G29390 (E=2e-042) RIK | RIK (RS2-Interacting KH protein); RNA binding

Coordinates

chrA09:+:2156408..2157312

Molecular Weight (calculated)

17554.1 Da

IEP (calculated)

8.505

GRAVY (calculated)

-0.374

Length

156 amino acids

Sequence
(BLAST)

001: MTGEDDEARR ASPIESAITN DDASRPIQSR KRNWDQLVAC RIRDELIIAR EIVINDAEAS LRHKLTLRST QEEIQRCTGA VVITRGKYRF LNAPLDGEKP
101: LYLHISAASH LKETTERILA VDRAAAMIEE MMRQKPSSQL GVVGFHTVKV RIVSSC

Best Arabidopsis Sequence Match ( AT3G29390.1 )
(BLAST)

001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS

Arabidopsis Description

RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.