Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- extracellular 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0007g00410.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G29390.1 | VIT_08s0007g00410.t01 | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH45025 | Soybean | nucleus | 56.9 | 58.32 |
| KRH01276 | Soybean | nucleus | 56.6 | 57.21 |
| Solyc02g066940.2.1 | Tomato | nucleus | 51.29 | 57.0 |
| CDY44389 | Canola | nucleus | 38.7 | 56.67 |
| PGSC0003DMT400064730 | Potato | nucleus | 50.53 | 56.25 |
| Bra036212.1-P | Field mustard | cytosol | 13.05 | 55.13 |
| CDY04081 | Canola | nucleus | 44.16 | 53.69 |
| Bra033103.1-P | Field mustard | nucleus | 44.01 | 52.25 |
| AT3G29390.1 | Thale cress | nucleus | 43.85 | 50.0 |
| CDY38575 | Canola | extracellular, mitochondrion, plastid | 12.44 | 46.59 |
| TraesCS4B01G247400.2 | Wheat | cytosol | 42.03 | 46.24 |
| TraesCS4D01G246700.1 | Wheat | nucleus | 42.49 | 46.05 |
| TraesCS4A01G057600.3 | Wheat | cytosol, endoplasmic reticulum, nucleus | 42.19 | 45.06 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.07 | 44.94 |
| Zm00001d028208_P009 | Maize | nucleus | 45.07 | 43.87 |
| KXG39878 | Sorghum | nucleus | 44.46 | 43.54 |
| HORVU4Hr1G067960.4 | Barley | endoplasmic reticulum, extracellular | 27.01 | 38.61 |
| Os03t0213900-02 | Rice | cytosol, nucleus | 22.0 | 37.86 |
Protein Annotations
| EntrezGene:100265165 | wikigene:100265165 | Gene3D:3.30.1370.10 | MapMan:35.1 | ProteinID:CBI21205 | ProteinID:CBI21205.3 |
| UniProt:D7SVA6 | EMBL:FN595232 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR036612 | InterPro:KH_dom_type_1_sf |
| EntrezGene:LOC100265165 | wikigene:LOC100265165 | SUPFAM:SSF54791 | TIGR:TC53412 | UniParc:UPI0001BE1BF6 | ArrayExpress:VIT_14s0068g00240 |
| EnsemblPlantsGene:VIT_14s0068g00240 | EnsemblPlants:VIT_14s0068g00240.t01 | RefSeq:XP_003633772 | RefSeq:XP_003633772.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr14:+:23956348..23964987
Molecular Weight (calculated)
69749.7 Da
IEP (calculated)
8.279
GRAVY (calculated)
-0.393
Length
659 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGYKWLSPS TASSLPQVLP EISFSEKRSW GFTWCRIENP QRKQNNMIED SCPRPASSDE ASAIRQRKKR KWDQPAESLV SAGVALPGVL PLGNVGPLVG
101: IPLAGVAPPS SALLTNVTIP PVFQTSSIQQ HASAIVQKLN QPKIQDELIA REIIINDAES TVRYKLTKRQ MQEEIQKCTG AVVITRGKYR PPNALPDGEK
201: PLYLHISAGA HLKDTAERIK AVDRAAAMVE EMLKQGQNSE SVPSNSHLAG NTGVTQAPST CVFLGFEADP SLNIAACIRG PNDQYINHIM NETGATVSLR
301: GRGSGNSESP NGEGQQPLHL FLSSNNLKGL EDAKLLAENL LDTICAECGA SRASSCKVYG AVPPPQQLLV GVQSSGNELN VKTSSTACLA SSAVSSTPTP
401: LVSPLTVPGV STGFSQGAVS QCGGFFNSGQ PQSNLVCYPP PSLTAGTSYS GYGGIYPQAT PLQQVALALR QSPSPVTSTI APSTSSASTV PMSSAASFSE
501: KEKRLPQRRK FQELPVALKG PTKPQQGLQL PSETTSGLTV RNSSTMPAPR KLVQPSSSGM PPPPPKGTMG PLPPPPPKFS SPARTMAPPP PPPKFNSSTT
601: IPEVDDKNVL NKSKSDTVPD TLSKLMEYGE EDDDPDEAGE ESCKNNSSVA VAPKPFWAV
101: IPLAGVAPPS SALLTNVTIP PVFQTSSIQQ HASAIVQKLN QPKIQDELIA REIIINDAES TVRYKLTKRQ MQEEIQKCTG AVVITRGKYR PPNALPDGEK
201: PLYLHISAGA HLKDTAERIK AVDRAAAMVE EMLKQGQNSE SVPSNSHLAG NTGVTQAPST CVFLGFEADP SLNIAACIRG PNDQYINHIM NETGATVSLR
301: GRGSGNSESP NGEGQQPLHL FLSSNNLKGL EDAKLLAENL LDTICAECGA SRASSCKVYG AVPPPQQLLV GVQSSGNELN VKTSSTACLA SSAVSSTPTP
401: LVSPLTVPGV STGFSQGAVS QCGGFFNSGQ PQSNLVCYPP PSLTAGTSYS GYGGIYPQAT PLQQVALALR QSPSPVTSTI APSTSSASTV PMSSAASFSE
501: KEKRLPQRRK FQELPVALKG PTKPQQGLQL PSETTSGLTV RNSSTMPAPR KLVQPSSSGM PPPPPKGTMG PLPPPPPKFS SPARTMAPPP PPPKFNSSTT
601: IPEVDDKNVL NKSKSDTVPD TLSKLMEYGE EDDDPDEAGE ESCKNNSSVA VAPKPFWAV
001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
Arabidopsis Description
RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.