Factsheet for HORVU4Hr1G067960.4

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

mitochondrion 2
extracellular 2
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G021230.1
HORVU5Hr1G112000.2
HORVU6Hr1G071420.2
HORVU7Hr1G077530.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G29390.1	HORVU5Hr1G021230.1	AT2G37630.1	16243907
AT3G29390.1	HORVU5Hr1G112000.2	AT2G37630.1	16243907
AT3G29390.1	HORVU6Hr1G071420.2	AT2G37630.1	16243907
AT3G29390.1	HORVU7Hr1G077530.1	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G246700.1	Wheat	nucleus	79.61	60.36
TraesCS4B01G247400.2	Wheat	cytosol	77.22	59.43
TraesCS4A01G057600.3	Wheat	cytosol, endoplasmic reticulum, nucleus	78.96	59.0
Os03t0213900-02	Rice	cytosol, nucleus	47.94	57.7
GSMUA_AchrUn_...	Banana	nucleus	8.68	44.94
KXG39878	Sorghum	nucleus	61.17	41.9
Zm00001d028208_P009	Maize	nucleus	61.17	41.65
CDY04081	Canola	nucleus	35.14	29.89
Bra033103.1-P	Field mustard	nucleus	34.92	29.01
AT3G29390.1	Thale cress	nucleus	35.79	28.55
CDY44389	Canola	nucleus	27.55	28.22
VIT_14s0068g00240.t01	Wine grape	nucleus	38.61	27.01
Solyc02g066940.2.1	Tomato	nucleus	34.27	26.64
PGSC0003DMT400064730	Potato	nucleus	34.06	26.52
KRH45025	Soybean	nucleus	35.79	25.66
KRH01276	Soybean	nucleus	36.23	25.61
GSMUA_Achr6P24580_001	Banana	nucleus	28.42	25.34
CDY38575	Canola	extracellular, mitochondrion, plastid	2.39	6.25
Bra036212.1-P	Field mustard	cytosol	1.74	5.13

Protein Annotations

EnsemblPlants:HORVU4Hr1G067960.4	EnsemblPlantsGene:HORVU4Hr1G067960	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR036612
InterPro:KH_dom_type_1_sf	SEG:seg	SUPFAM:SSF54791	UniParc:UPI000B474006	UniProt:A0A287PI15	MapMan:35.1

Description

No Description!

Coordinates

chrchr4H:-:564186665..564191615

Molecular Weight (calculated)

49393.5 Da

IEP (calculated)

7.811

GRAVY (calculated)

-0.416

Length

461 amino acids

Sequence
(BLAST)

001: MQLNTFKGRI VWGNFALWPL IGSFCWKRAV PFSASIFLGF DADPSLNVAA RIRGPNDQYI NHIMNETGVT VVLRGKDSGN LGNCHNEASQ QPLHMHLSSV
101: HLKSLEVAKI LAENLLDTIA AELGASRISS SKVYGAVPPP QQLLTGVHTS GTSDIFVSTG ASHSFSPTGV TSPIAAPSAT LQSGVPTYSG IPPPSNLIYP
201: SQAAKAGAFY NGYGDIYAQA TPLQQVALTL KHASSSTTQV VPVASTSASM MTNVNPSTKL EADKRSQRRK FQELPTADLQ NSQQGSKFVK TGLEDLGKMN
301: SSLAAAAMKV QPGSNRILPQ DPHPSHLSVY TSMPPPPPPP PKNMSLPYPN NMPAPPPRSM LQPALPHKNM SLPYSNSMPP PPPRSMPPPP PKFPSNEVLR
401: NENIHSYLKE TLAPLRSLDA SSAAPPSKEP NKEEKPSSAS VSDTLLKLMD YGDDDDDEDD D

Best Arabidopsis Sequence Match ( AT3G29390.1 )
(BLAST)

001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS

Arabidopsis Description

RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.