Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 9.67 | 56.18 |
| TraesCS4D01G246700.1 | Wheat | nucleus | 47.2 | 40.13 |
| TraesCS4B01G247400.2 | Wheat | cytosol | 46.42 | 40.07 |
| TraesCS4A01G057600.3 | Wheat | cytosol, endoplasmic reticulum, nucleus | 47.0 | 39.38 |
| Zm00001d028208_P009 | Maize | nucleus | 48.94 | 37.37 |
| KXG39878 | Sorghum | nucleus | 48.36 | 37.15 |
| HORVU4Hr1G067960.4 | Barley | endoplasmic reticulum, extracellular | 25.34 | 28.42 |
| Os03t0213900-02 | Rice | cytosol, nucleus | 18.18 | 24.54 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P24580_001 | EnsemblPlants:GSMUA_Achr6T24580_001 | EnsemblPlantsGene:GSMUA_Achr6G24580_001 | Gene3D:3.30.1370.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:IPR036612 | InterPro:KH_dom_type_1_sf | PANTHER:PTHR15744 | SEG:seg | SUPFAM:SSF54791 | UniParc:UPI000294EEEE |
| UniProt:M0T9V4 | MapMan:35.1 | : | : | : | : |
Description
Protein RIK [Source:GMGC_GENE;Acc:GSMUA_Achr6G24580_001]
Coordinates
chr6:-:25397706..25406393
Molecular Weight (calculated)
55364.0 Da
IEP (calculated)
8.191
GRAVY (calculated)
-0.141
Length
517 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEDRSPKDP DESAVATSVG RQRKKRKWDQ PAEPLLSAGI AVPGVPLAPN TILGTTLPGA VPFSGSLLTN SVPSTFVYPP QLVQSLAVPQ NAAAIIQKLN
101: QPKIQDELIA REIVINDAEP TARYKLTKRQ TQEEIQKCTG AVVITRGKYR PPNGLPDSEK PLYLHISAGA HLKDTAERIK AVDHAAAMVE EILKQGQSSL
201: MSSTPLQSVL LNGPVIQALS MCLFLGFDAD PSLNIATRIR GPNDLYINHI MNETGATVVL RGRGSEHLDS SHEETLQPLH LYLSSTNPKS LEAAKILAEN
301: LLDTIASECG ASRISSTKVY GAVPPPQQLL LGTESSSKVA SAGNVNQIAI FPSTATCSMV ATQSFLPGGD PLSAVSIVSS QGTAVQSGDV LKYGNPQNLV
401: SYTVPAVTRA TCYNGYEGIY PQSTPLQQVA LALRQASTSS ACVSSTSCFV DTTEQKSSLN AKADARPPQK RKFQEIPVTS KVSTAFQVFS LTFSEVDRLI
501: AYNRWTCIYV ARFSTAV
101: QPKIQDELIA REIVINDAEP TARYKLTKRQ TQEEIQKCTG AVVITRGKYR PPNGLPDSEK PLYLHISAGA HLKDTAERIK AVDHAAAMVE EILKQGQSSL
201: MSSTPLQSVL LNGPVIQALS MCLFLGFDAD PSLNIATRIR GPNDLYINHI MNETGATVVL RGRGSEHLDS SHEETLQPLH LYLSSTNPKS LEAAKILAEN
301: LLDTIASECG ASRISSTKVY GAVPPPQQLL LGTESSSKVA SAGNVNQIAI FPSTATCSMV ATQSFLPGGD PLSAVSIVSS QGTAVQSGDV LKYGNPQNLV
401: SYTVPAVTRA TCYNGYEGIY PQSTPLQQVA LALRQASTSS ACVSSTSCFV DTTEQKSSLN AKADARPPQK RKFQEIPVTS KVSTAFQVFS LTFSEVDRLI
501: AYNRWTCIYV ARFSTAV
001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
Arabidopsis Description
RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.