Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G079100.1 | |
| TraesCS5B01G086900.1 | |
| TraesCS5D01G093100.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G29390.1 | TraesCS5A01G079100.1 | AT2G37630.1 | 16243907 |
| AT3G29390.1 | TraesCS5B01G086900.1 | AT2G37630.1 | 16243907 |
| AT3G29390.1 | TraesCS5D01G093100.1 | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G246700.1 | Wheat | nucleus | 94.81 | 96.22 |
| TraesCS4B01G247400.2 | Wheat | cytosol | 92.54 | 95.33 |
| HORVU4Hr1G067960.4 | Barley | endoplasmic reticulum, extracellular | 59.0 | 78.96 |
| Zm00001d028208_P009 | Maize | nucleus | 70.34 | 64.11 |
| KXG39878 | Sorghum | nucleus | 69.85 | 64.04 |
| Os03t0213900-02 | Rice | cytosol, nucleus | 38.25 | 61.62 |
| Bra036212.1-P | Field mustard | cytosol | 12.32 | 48.72 |
| GSMUA_Achr6P24580_001 | Banana | nucleus | 39.38 | 47.0 |
| CDY44389 | Canola | nucleus | 33.87 | 46.44 |
| CDY04081 | Canola | nucleus | 38.9 | 44.28 |
| AT3G29390.1 | Thale cress | nucleus | 40.36 | 43.08 |
| Bra033103.1-P | Field mustard | nucleus | 38.74 | 43.06 |
| KRH01276 | Soybean | nucleus | 44.89 | 42.48 |
| KRH45025 | Soybean | nucleus | 44.08 | 42.3 |
| VIT_14s0068g00240.t01 | Wine grape | nucleus | 45.06 | 42.19 |
| Solyc02g066940.2.1 | Tomato | nucleus | 40.19 | 41.82 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.0 | 41.57 |
| CDY38575 | Canola | extracellular, mitochondrion, plastid | 11.83 | 41.48 |
| PGSC0003DMT400064730 | Potato | nucleus | 39.55 | 41.22 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G057600.3 | EnsemblPlantsGene:TraesCS4A01G057600 | Gene3D:3.30.1370.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom_type_1_sf | ncoils:Coil | SEG:seg | SUPFAM:SSF54791 |
| TMHMM:TMhelix | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:48289533..48297791
Molecular Weight (calculated)
65647.6 Da
IEP (calculated)
7.473
GRAVY (calculated)
-0.429
Length
617 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEERISRAS DEPPTATKQR KKRKWDQPAE DLVAAAAAAA AAAGLPVLNV AALAGVQFPG TTAYPAAPYA LPPQLAPSVL QSAAAAIQKL SQAKLPDELI
101: AREVVINDAD PSVRYKLTKR QTQDEIQRCT CTVIITRGKY HPPNGQPDGE KPLYLHISAG SQLKDTAERI KAVDLAASMI EDILKHGQMP EATSANFPSI
201: QSNRQAVPFS ASIFLGFDAD PSLNVAARIR GPNDQYINHI MNETGVTVVL RGKDSGNLGN CHAEASQQPL HMHLSGVHLK SLEAAKVLAE NLLDTIAAEL
301: GASRISSSKV YGAVPPPQQL LTGVHTSGTS DMCVSTGASH SFAPTGVTSP IAAPSVTLQS GAPTYSGILP PSNLIYPSQA ANHGAFYNGY GDIYPQATPL
401: QQVALTLKHA SSSTTQVIPV ASTSASMTTS VNTSTKLEAD KRSQRRKFQE LPTADLQVFS PTMSEARRVN SQQGSKFVKT GLDDLGKMNS SSVAATMKVQ
501: PGSNRILPQD PHPSHPSVYT SMPPPPPPKN MSLPYPNSMP PPPPRSMPPP PPKFPSNEVL RNENRHSAVK ELLAPPRSSS AAPPPKEPKE EKPSSASVSD
601: TLLKLMDYGD DDEEDDD
101: AREVVINDAD PSVRYKLTKR QTQDEIQRCT CTVIITRGKY HPPNGQPDGE KPLYLHISAG SQLKDTAERI KAVDLAASMI EDILKHGQMP EATSANFPSI
201: QSNRQAVPFS ASIFLGFDAD PSLNVAARIR GPNDQYINHI MNETGVTVVL RGKDSGNLGN CHAEASQQPL HMHLSGVHLK SLEAAKVLAE NLLDTIAAEL
301: GASRISSSKV YGAVPPPQQL LTGVHTSGTS DMCVSTGASH SFAPTGVTSP IAAPSVTLQS GAPTYSGILP PSNLIYPSQA ANHGAFYNGY GDIYPQATPL
401: QQVALTLKHA SSSTTQVIPV ASTSASMTTS VNTSTKLEAD KRSQRRKFQE LPTADLQVFS PTMSEARRVN SQQGSKFVKT GLDDLGKMNS SSVAATMKVQ
501: PGSNRILPQD PHPSHPSVYT SMPPPPPPKN MSLPYPNSMP PPPPRSMPPP PPKFPSNEVL RNENRHSAVK ELLAPPRSSS AAPPPKEPKE EKPSSASVSD
601: TLLKLMDYGD DDEEDDD
001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
Arabidopsis Description
RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.