Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES17234 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G29390.1 | EES17234 | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028208_P009 | Maize | nucleus | 86.18 | 85.67 |
| TraesCS4D01G246700.1 | Wheat | nucleus | 64.19 | 71.05 |
| TraesCS4B01G247400.2 | Wheat | cytosol | 62.41 | 70.12 |
| TraesCS4A01G057600.3 | Wheat | cytosol, endoplasmic reticulum, nucleus | 64.04 | 69.85 |
| Os03t0213900-02 | Rice | cytosol, nucleus | 36.7 | 64.49 |
| HORVU4Hr1G067960.4 | Barley | endoplasmic reticulum, extracellular | 41.9 | 61.17 |
| Bra036212.1-P | Field mustard | cytosol | 11.89 | 51.28 |
| GSMUA_Achr6P24580_001 | Banana | nucleus | 37.15 | 48.36 |
| CDY44389 | Canola | nucleus | 31.5 | 47.11 |
| CDY04081 | Canola | nucleus | 37.74 | 46.86 |
| AT3G29390.1 | Thale cress | nucleus | 39.38 | 45.85 |
| Bra033103.1-P | Field mustard | nucleus | 37.59 | 45.59 |
| GSMUA_AchrUn_... | Banana | nucleus | 5.94 | 44.94 |
| CDY38575 | Canola | extracellular, mitochondrion, plastid | 11.74 | 44.89 |
| VIT_14s0068g00240.t01 | Wine grape | nucleus | 43.54 | 44.46 |
| Solyc02g066940.2.1 | Tomato | nucleus | 38.93 | 44.18 |
| KRH01276 | Soybean | nucleus | 42.79 | 44.17 |
| KRH45025 | Soybean | nucleus | 41.6 | 43.55 |
| PGSC0003DMT400064730 | Potato | nucleus | 37.74 | 42.91 |
Protein Annotations
| EnsemblPlants:KXG39878 | EnsemblPlantsGene:SORBI_3001G456900 | Gene3D:3.30.1370.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR036612 |
| InterPro:KH_dom_type_1_sf | ncoils:Coil | ProteinID:KXG39878 | ProteinID:KXG39878.1 | SEG:seg | SUPFAM:SSF54791 |
| UniParc:UPI0001C80B2F | UniProt:A0A1B6QPN2 | MapMan:35.1 | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:73304088..73310634
Molecular Weight (calculated)
71626.1 Da
IEP (calculated)
6.802
GRAVY (calculated)
-0.445
Length
673 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEDRAHKVA DEPAAAGRRR PERKKRKWDQ PAEDLVSAAM KAAAVAGMPV MNFCALPGAA LPGVTAYGAA TLPSVVPVPH SLPPHIAPSV LPSAAAAVQK
101: LSQAKLPDEV IAREIVINDA DPSVRYKLTK RQTQEEIQRC TNTVIITRGK YHPPNEHPDG EKPLYLHISA GSQLKDTAER IKAVDRAASM IEEILKQGTI
201: SESISTPFSS SGGQAVRPFS ASIFLGFDAD PSLNIAARVR GPNDQYINHI MRETGVTVVL RGKDSENLGS CHGEASQQPL HLYLASMHLK NLEAAKVLAE
301: NLLDTIAAEF GASRISSSNV YGAVPPPQQL LTGTDTSGVK TDVHYTLGPN VLSGAPHSFA STGVIAPAVT VQSGAPTYSG VPPPSNMACP IPPVNGGAFY
401: SGYGDIYPQA TPLQQVAFTL KHASSSAAQA VPVTPTPTSM GTKENSTLDV EMDKRSRRKF QELPVSKGPA TESQNSQQGS KFVKTGLDSL GYIGSSSIAP
501: PKKVHPGSNG MLPLEEADMP SHLSISTKLP APPLKSMLPP PTKNMPPPPP KSMPPPLPPK NMLPPPSKSM PPLPPKFPSD ELLSRNENKT FALKELTAPP
601: RPLDAKSVLP SQQRPKEPEE QTKGTPVSDT LLKLIDYGDD DDDDDDDDDT DVTDNIPKGS PTPGSEQKPF WAV
101: LSQAKLPDEV IAREIVINDA DPSVRYKLTK RQTQEEIQRC TNTVIITRGK YHPPNEHPDG EKPLYLHISA GSQLKDTAER IKAVDRAASM IEEILKQGTI
201: SESISTPFSS SGGQAVRPFS ASIFLGFDAD PSLNIAARVR GPNDQYINHI MRETGVTVVL RGKDSENLGS CHGEASQQPL HLYLASMHLK NLEAAKVLAE
301: NLLDTIAAEF GASRISSSNV YGAVPPPQQL LTGTDTSGVK TDVHYTLGPN VLSGAPHSFA STGVIAPAVT VQSGAPTYSG VPPPSNMACP IPPVNGGAFY
401: SGYGDIYPQA TPLQQVAFTL KHASSSAAQA VPVTPTPTSM GTKENSTLDV EMDKRSRRKF QELPVSKGPA TESQNSQQGS KFVKTGLDSL GYIGSSSIAP
501: PKKVHPGSNG MLPLEEADMP SHLSISTKLP APPLKSMLPP PTKNMPPPPP KSMPPPLPPK NMLPPPSKSM PPLPPKFPSD ELLSRNENKT FALKELTAPP
601: RPLDAKSVLP SQQRPKEPEE QTKGTPVSDT LLKLIDYGDD DDDDDDDDDT DVTDNIPKGS PTPGSEQKPF WAV
001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
Arabidopsis Description
RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.