Factsheet for Os03t0213900-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular, nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os12t0572000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G29390.1	Os12t0572000-01	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G067960.4	Barley	endoplasmic reticulum, extracellular	57.7	47.94
TraesCS4D01G246700.1	Wheat	nucleus	61.88	38.98
TraesCS4A01G057600.3	Wheat	cytosol, endoplasmic reticulum, nucleus	61.62	38.25
TraesCS4B01G247400.2	Wheat	cytosol	58.49	37.4
Zm00001d028208_P009	Maize	nucleus	66.06	37.37
KXG39878	Sorghum	nucleus	64.49	36.7
Solyc02g066940.2.1	Tomato	nucleus	35.51	22.93
PGSC0003DMT400064730	Potato	nucleus	34.2	22.13
VIT_14s0068g00240.t01	Wine grape	nucleus	37.86	22.0
CDY04081	Canola	nucleus	30.55	21.59
KRH45025	Soybean	nucleus	34.99	20.84
KRH01276	Soybean	nucleus	35.25	20.71
Bra033103.1-P	Field mustard	nucleus	29.24	20.18
AT3G29390.1	Thale cress	nucleus	30.03	19.9
GSMUA_AchrUn_...	Banana	nucleus	4.44	19.1
CDY44389	Canola	nucleus	22.19	18.89
GSMUA_Achr6P24580_001	Banana	nucleus	24.54	18.18
CDY38575	Canola	extracellular, mitochondrion, plastid	1.04	2.27
Bra036212.1-P	Field mustard	cytosol	0.52	1.28

Protein Annotations

EnsemblPlants:Os03t0213900-02	EnsemblPlantsGene:Os03g0213900	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR036612
InterPro:KH_dom_type_1_sf	ncoils:Coil	ProteinID:BAS82948.1	SEG:seg	UniParc:UPI0003938A17	UniProt:A0A0P0VUM0
MapMan:35.1	:	:	:	:	:

Description

Conserved hypothetical protein. (Os03t0213900-01);Similar to ROUGH SHEATH2-interacting KH-domain protein. (Os03t0213900-02)

Coordinates

chr3:+:5969993..5973703

Molecular Weight (calculated)

40207.3 Da

IEP (calculated)

7.272

GRAVY (calculated)

-0.460

Length

383 amino acids

Sequence
(BLAST)

001: ASQQPLHLYI SSMHVKNLEA AKVLAENLLD TIAAEFGASR ISSSKVYGAV PPPQQLLDGV QTSGTIPDVH PTLGPNVLTG ASHSFASTGA NASLVAPSVT
101: SQSGAPSYSV VSPPSNLICP SQPANGGTFY GGYGGIYPQA TPLQQVALTL KHASSSSTQV VSATSTSTST VAMVNPCSHA EADKRSQRRK FQELPVSQGA
201: TTEVQNSQQR SKFVKTGLDG LGNMTNSSIE PPIKVQPGSN GMLLQDQPHV SAHPSASKNM LPPPPPPPRN MLPPPPKSMP PPPPKFPSNE MSRNEDRRSD
301: LNKPMAPPRS LDVSSVSPPN LYSAQLPSKE PRVVKPGGAS VSDTLLKLMD YGDDDEEDNI DETNSVLGGN PTSISGQKPF WAV

Best Arabidopsis Sequence Match ( AT3G29390.1 )
(BLAST)

001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS

Arabidopsis Description

RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.