Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400022771 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G29390.1 | PGSC0003DMT400022771 | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g066940.2.1 | Tomato | nucleus | 90.54 | 90.39 |
| Bra036212.1-P | Field mustard | cytosol | 14.53 | 55.13 |
| CDY44389 | Canola | nucleus | 40.2 | 52.89 |
| VIT_14s0068g00240.t01 | Wine grape | nucleus | 56.25 | 50.53 |
| KRH45025 | Soybean | nucleus | 53.89 | 49.61 |
| KRH01276 | Soybean | nucleus | 53.89 | 48.93 |
| CDY04081 | Canola | nucleus | 44.76 | 48.89 |
| Bra033103.1-P | Field mustard | nucleus | 45.61 | 48.65 |
| AT3G29390.1 | Thale cress | nucleus | 45.95 | 47.06 |
| CDY38575 | Canola | extracellular, mitochondrion, plastid | 13.51 | 45.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.59 | 43.82 |
| TraesCS4D01G246700.1 | Wheat | nucleus | 42.06 | 40.95 |
| TraesCS4B01G247400.2 | Wheat | cytosol | 41.05 | 40.57 |
| TraesCS4A01G057600.3 | Wheat | cytosol, endoplasmic reticulum, nucleus | 41.22 | 39.55 |
| Zm00001d028208_P009 | Maize | nucleus | 43.92 | 38.4 |
| KXG39878 | Sorghum | nucleus | 42.91 | 37.74 |
| Os03t0213900-02 | Rice | cytosol, nucleus | 22.13 | 34.2 |
| HORVU4Hr1G067960.4 | Barley | endoplasmic reticulum, extracellular | 26.52 | 34.06 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400064730 | EnsemblPlantsGene:PGSC0003DMG400025145 | EntrezGene:102580038 | Gene3D:3.30.1370.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:IPR036612 | InterPro:KH_dom_type_1_sf | PGSC:PGSC0003DMG400025145 | RefSeq:XP_006363429.1 | SEG:seg | SUPFAM:SSF54791 |
| UniParc:UPI0002953330 | UniProt:M1CCT3 | MapMan:35.1 | : | : | : |
Description
Protein RIK [Source:PGSC_GENE;Acc:PGSC0003DMG400025145]
Coordinates
chr2:-:25304888..25313841
Molecular Weight (calculated)
62952.8 Da
IEP (calculated)
6.714
GRAVY (calculated)
-0.316
Length
592 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEDNCPRVS SSETVDSNSS STKQRKRRKW DQPAETFVPE GVAVSGIFPL VNTGSLAGIT LPGVIPVLGA AFTNPLTAIG ATTVQQLPVI IAQKSVQPKI
101: QDELIAREIV INDADPSVRY RLTKRQTQEE IQKSTGAVVI TRGKYKPPSA PSDGEKPLYL HISAGAHLET TLERIRAVDR AAAVVEEMLK QSPVNNGLKV
201: NHLLSTCVYL GFEADPSANI TVRIRGPNDQ YINHIMNETG ATVLLRGRGS GYSDEGEGED VHQPLHLLIS SNNSASLERA KLLAENLLDT ICAECGASRV
301: SSCKVYGAVP PPLQPLASVQ VSGSESEVNN IPTANVAAQI LSFSTAAAVP VTAAAGVTGV VSQGTVPQSL GSLNPVPSQP PTSCYPHQLV ASRTSYIGYD
401: GIYPQATALQ QVALALRQST SPVTTTVPPA TTGPSITSQT STGTEKDKRP AQKRKFQELP AGGKGQSTVN QNPLQGTELL MLQERMSDKG DRDKIGTPAP
501: RKLVQPLSSS MLPPPPPRMM PPLPPPPKFQ SSSQKVHDNN VVNKAPCKIV PDTLVQLMEY GDDDDDDNDE AIDGPLKCSS SAVATPKPFW AV
101: QDELIAREIV INDADPSVRY RLTKRQTQEE IQKSTGAVVI TRGKYKPPSA PSDGEKPLYL HISAGAHLET TLERIRAVDR AAAVVEEMLK QSPVNNGLKV
201: NHLLSTCVYL GFEADPSANI TVRIRGPNDQ YINHIMNETG ATVLLRGRGS GYSDEGEGED VHQPLHLLIS SNNSASLERA KLLAENLLDT ICAECGASRV
301: SSCKVYGAVP PPLQPLASVQ VSGSESEVNN IPTANVAAQI LSFSTAAAVP VTAAAGVTGV VSQGTVPQSL GSLNPVPSQP PTSCYPHQLV ASRTSYIGYD
401: GIYPQATALQ QVALALRQST SPVTTTVPPA TTGPSITSQT STGTEKDKRP AQKRKFQELP AGGKGQSTVN QNPLQGTELL MLQERMSDKG DRDKIGTPAP
501: RKLVQPLSSS MLPPPPPRMM PPLPPPPKFQ SSSQKVHDNN VVNKAPCKIV PDTLVQLMEY GDDDDDDNDE AIDGPLKCSS SAVATPKPFW AV
001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
Arabidopsis Description
RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.