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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY44389 Canola nucleus 74.17 89.33
AT3G29390.1 Thale cress nucleus 70.3 65.92
CDY38575 Canola extracellular, mitochondrion, plastid 19.0 58.52
KRH45025 Soybean nucleus 53.51 45.1
GSMUA_AchrUn_... Banana nucleus 7.38 44.94
KRH01276 Soybean nucleus 53.87 44.79
PGSC0003DMT400064730 Potato nucleus 48.89 44.76
Solyc02g066940.2.1 Tomato nucleus 48.52 44.35
VIT_14s0068g00240.t01 Wine grape nucleus 53.69 44.16
TraesCS4B01G247400.2 Wheat cytosol 43.73 39.57
TraesCS4D01G246700.1 Wheat nucleus 43.91 39.14
TraesCS4A01G057600.3 Wheat cytosol, endoplasmic reticulum, nucleus 44.28 38.9
KXG39878 Sorghum nucleus 46.86 37.74
Zm00001d028208_P009 Maize nucleus 46.49 37.22
HORVU4Hr1G067960.4 Barley endoplasmic reticulum, extracellular 29.89 35.14
Os03t0213900-02 Rice cytosol, nucleus 21.59 30.55
Protein Annotations
EnsemblPlants:CDY04081EnsemblPlantsGene:GSBRNA2T00117695001Gene3D:3.30.1370.10GO:A0A078ES75GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488InterPro:IPR036612InterPro:KH_dom_type_1_sfPANTHER:PTHR15744ProteinID:CDY04081
ProteinID:CDY04081.1SEG:segSUPFAM:SSF54791UniParc:UPI0004EEB84FMapMan:35.1:
Description
BnaC02g37960D
Coordinates
chrLK031948:+:956401..960534
Molecular Weight (calculated)
58721.0 Da
IEP (calculated)
9.115
GRAVY (calculated)
-0.583
Length
542 amino acids
Sequence
(BLAST)
001: MTDNGDEEAR VPPSDSASRT RQRRKRKWDQ PAEQLVAAGV VLPRLGKVPP APLFQTPLPK LIQDELNIAR EIVINDAEAS LRHKLTKRST QEEIQRSTGA
101: VVITRGKYRP PNAPPDGEKP LYLHISAAAH LKETSERILA VDRAAAMIEE MMKQKTNSQV GLVGSQTVKM LNTCVYLGFE ADPSSNVAAR IRGPNDQYIN
201: HIMNETGATV VLRGRGSGCL ENQHGEEAQQ QLHLLLSSSN QKSIDDAKRL AENLMDTISV EFGASRVSSS KVYGAVPPPQ QLLAGAPSSE TAQKPNLSSS
301: YGLMTPPNAV NPYPVPPATT TLYPQFPVLQ HPPGISNGGQ LRPSPVSYLQ PAAGGTSYSG YAGIYPQATP LQQVAQVLKL SVSPVVSTVP PTLLTAAALS
401: KPSDIPSKET ERRPPQKRKF QELPADCKVT AKSKEQPELA MAGEVAPKNI VEPRSNGVQS LPSPRSMMPP PPPKTIQPPP SRDVSPPSSR TMLPPPPRFT
501: PSKQPPAPRL QEDQITIKKP NPVPDTLIKL MEYGDDEDDD ED
Best Arabidopsis Sequence Match ( AT3G29390.1 )
(BLAST)
001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
Arabidopsis Description
RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.