Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G29390.1 | CDX74943 | AT2G37630.1 | 16243907 |
AT3G29390.1 | CDX79747 | AT2G37630.1 | 16243907 |
AT3G29390.1 | CDX91374 | AT2G37630.1 | 16243907 |
AT3G29390.1 | CDY07778 | AT2G37630.1 | 16243907 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY44389 | Canola | nucleus | 74.17 | 89.33 |
AT3G29390.1 | Thale cress | nucleus | 70.3 | 65.92 |
CDY38575 | Canola | extracellular, mitochondrion, plastid | 19.0 | 58.52 |
KRH45025 | Soybean | nucleus | 53.51 | 45.1 |
GSMUA_AchrUn_... | Banana | nucleus | 7.38 | 44.94 |
KRH01276 | Soybean | nucleus | 53.87 | 44.79 |
PGSC0003DMT400064730 | Potato | nucleus | 48.89 | 44.76 |
Solyc02g066940.2.1 | Tomato | nucleus | 48.52 | 44.35 |
VIT_14s0068g00240.t01 | Wine grape | nucleus | 53.69 | 44.16 |
TraesCS4B01G247400.2 | Wheat | cytosol | 43.73 | 39.57 |
TraesCS4D01G246700.1 | Wheat | nucleus | 43.91 | 39.14 |
TraesCS4A01G057600.3 | Wheat | cytosol, endoplasmic reticulum, nucleus | 44.28 | 38.9 |
KXG39878 | Sorghum | nucleus | 46.86 | 37.74 |
Zm00001d028208_P009 | Maize | nucleus | 46.49 | 37.22 |
HORVU4Hr1G067960.4 | Barley | endoplasmic reticulum, extracellular | 29.89 | 35.14 |
Os03t0213900-02 | Rice | cytosol, nucleus | 21.59 | 30.55 |
Protein Annotations
EnsemblPlants:CDY04081 | EnsemblPlantsGene:GSBRNA2T00117695001 | Gene3D:3.30.1370.10 | GO:A0A078ES75 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom_type_1_sf | PANTHER:PTHR15744 | ProteinID:CDY04081 |
ProteinID:CDY04081.1 | SEG:seg | SUPFAM:SSF54791 | UniParc:UPI0004EEB84F | MapMan:35.1 | : |
Description
BnaC02g37960D
Coordinates
chrLK031948:+:956401..960534
Molecular Weight (calculated)
58721.0 Da
IEP (calculated)
9.115
GRAVY (calculated)
-0.583
Length
542 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDNGDEEAR VPPSDSASRT RQRRKRKWDQ PAEQLVAAGV VLPRLGKVPP APLFQTPLPK LIQDELNIAR EIVINDAEAS LRHKLTKRST QEEIQRSTGA
101: VVITRGKYRP PNAPPDGEKP LYLHISAAAH LKETSERILA VDRAAAMIEE MMKQKTNSQV GLVGSQTVKM LNTCVYLGFE ADPSSNVAAR IRGPNDQYIN
201: HIMNETGATV VLRGRGSGCL ENQHGEEAQQ QLHLLLSSSN QKSIDDAKRL AENLMDTISV EFGASRVSSS KVYGAVPPPQ QLLAGAPSSE TAQKPNLSSS
301: YGLMTPPNAV NPYPVPPATT TLYPQFPVLQ HPPGISNGGQ LRPSPVSYLQ PAAGGTSYSG YAGIYPQATP LQQVAQVLKL SVSPVVSTVP PTLLTAAALS
401: KPSDIPSKET ERRPPQKRKF QELPADCKVT AKSKEQPELA MAGEVAPKNI VEPRSNGVQS LPSPRSMMPP PPPKTIQPPP SRDVSPPSSR TMLPPPPRFT
501: PSKQPPAPRL QEDQITIKKP NPVPDTLIKL MEYGDDEDDD ED
101: VVITRGKYRP PNAPPDGEKP LYLHISAAAH LKETSERILA VDRAAAMIEE MMKQKTNSQV GLVGSQTVKM LNTCVYLGFE ADPSSNVAAR IRGPNDQYIN
201: HIMNETGATV VLRGRGSGCL ENQHGEEAQQ QLHLLLSSSN QKSIDDAKRL AENLMDTISV EFGASRVSSS KVYGAVPPPQ QLLAGAPSSE TAQKPNLSSS
301: YGLMTPPNAV NPYPVPPATT TLYPQFPVLQ HPPGISNGGQ LRPSPVSYLQ PAAGGTSYSG YAGIYPQATP LQQVAQVLKL SVSPVVSTVP PTLLTAAALS
401: KPSDIPSKET ERRPPQKRKF QELPADCKVT AKSKEQPELA MAGEVAPKNI VEPRSNGVQS LPSPRSMMPP PPPKTIQPPP SRDVSPPSSR TMLPPPPRFT
501: PSKQPPAPRL QEDQITIKKP NPVPDTLIKL MEYGDDEDDD ED
001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
Arabidopsis Description
RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.