CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81360
CDY01457
CDY04081
CDY12784
CDY16414
CDY18621
CDY22597
CDY38575
CDY41739
CDY43007
CDY44389
CDY46781
CDY49845
CDY52150
CDY60257
CDY67026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37630.1	CDY22597	AT1G32230.1	19548978
AT2G37630.1	CDY41739	AT1G32230.1	19548978
AT2G37630.1	CDY43007	AT1G32230.1	19548978
AT2G37630.1	CDY60257	AT1G32230.1	19548978
AT2G37630.1	CDY67026	AT1G32230.1	19548978
AT2G37630.1	CDY16414	AT1G65620.1	19228338
AT2G37630.1	CDY46781	AT1G65620.1	19228338
AT2G37630.1	CDY04081	AT3G29390.1	16243907
AT2G37630.1	CDY38575	AT3G29390.1	16243907
AT2G37630.1	CDY44389	AT3G29390.1	16243907
AT2G37630.1	CDX81360	AT5G66870.1	16243907
AT2G37630.1	CDY01457	AT5G66870.1	16243907
AT2G37630.1	CDY12784	AT5G66870.1	16243907
AT2G37630.1	CDY18621	AT5G66870.1	16243907
AT2G37630.1	CDY49845	AT5G66870.1	16243907
AT2G37630.1	CDY52150	AT5G66870.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000011.1-P	Field mustard	nucleus	100.0	100.0
CDX79747	Canola	nucleus	97.12	96.84
CDX91374	Canola	nucleus	92.22	89.64
CDX74943	Canola	nucleus	91.64	86.89
AT2G37630.1	Thale cress	nucleus	91.35	86.38
VIT_08s0007g00410.t01	Wine grape	nucleus	73.2	70.95
Solyc09g010840.1.1	Tomato	nucleus	70.61	68.06
GSMUA_Achr7P10550_001	Banana	nucleus	59.37	67.32
PGSC0003DMT400022771	Potato	nucleus	70.03	67.31
KRG99949	Soybean	nucleus	69.16	67.23
KRH49100	Soybean	nucleus	68.88	66.2
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	31.41	65.66
KRH66092	Soybean	nucleus	66.28	64.43
KRG99521	Soybean	nucleus	65.13	64.2
GSMUA_Achr9P28330_001	Banana	nucleus	59.37	63.98
TraesCS5A01G079100.1	Wheat	nucleus	59.08	59.77
GSMUA_Achr9P03320_001	Banana	nucleus	46.97	59.06
Os12t0572000-01	Rice	nucleus	57.06	57.89
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	59.65	57.34
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	59.94	57.3
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	59.65	57.18
Zm00001d030737_P001	Maize	nucleus	57.06	53.51
EES17234	Sorghum	nucleus	57.35	52.23
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	33.72	39.66
CDX93535	Canola	nucleus	8.93	37.35
GSMUA_Achr5P29070_001	Banana	nucleus	62.25	36.73
CDX95030	Canola	nucleus	11.82	35.96
HORVU6Hr1G071420.2	Barley	plastid	16.43	30.98
CDY31125	Canola	nucleus	15.56	20.38
CDY30719	Canola	nucleus	15.56	20.15
CDY32135	Canola	nucleus	15.27	19.85
CDY00289	Canola	nucleus	15.56	19.49
CDY04044	Canola	nucleus	17.58	19.43
CDY16773	Canola	nucleus	16.14	18.98
CDX85227	Canola	nucleus	18.16	18.92
CDX86405	Canola	nucleus	18.16	18.92
CDX86406	Canola	nucleus	18.16	18.92
CDY44428	Canola	nucleus	17.58	18.71
CDY00107	Canola	nucleus	18.16	18.64
CDX85848	Canola	nucleus	17.29	18.52
CDX68173	Canola	nucleus	17.0	18.27
CDY69264	Canola	nucleus	17.29	18.07
CDX96557	Canola	nucleus	17.0	17.72
CDX87250	Canola	nucleus	17.0	17.61
CDX73103	Canola	nucleus	16.43	17.22
CDY64733	Canola	nucleus	3.46	5.8
CDX95031	Canola	nucleus, plastid	2.02	4.52

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078F7T3	UniProt:A0A078F7T3	EnsemblPlants:CDY07778	ProteinID:CDY07778
ProteinID:CDY07778.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987
GO:GO:0010338	EnsemblPlantsGene:GSBRNA2T00124910001	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF13921
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF457	InterPro:RS2/AS1	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002540008	SEG:seg	:	:	:

Description

BnaA03g17330DBnaA03g17330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7T3]

Coordinates

chrLK031980:+:923192..924894

Molecular Weight (calculated)

40407.4 Da

IEP (calculated)

9.903

GRAVY (calculated)

-0.993

Length

347 amino acids

Sequence
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SDRMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSVSVPMASS NGPPSNHVIP PWLATPNNGN SVSVRPPSVT LTLSPSSVAA ASPQPPIPWL
201: QQPERGETHV LGSMIPSCSG GNSESVFMSE LMECCRELEE GHRAWAEHKK EAAWRLRRLE LQLESEKTSR QREKMEEIEA KMKALREEQK MAMEKIEGEY
301: REQLVGLRRD AEAKEQKLAD QWSSKHIRLT KFLEQHMGCR QRLLDRP

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.