CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85848	Canola	nucleus	95.98	95.68
Bra003793.1-P	Field mustard	nucleus	98.45	94.08
CDX93535	Canola	nucleus	22.29	86.75
CDX95030	Canola	nucleus	29.1	82.46
CDX73103	Canola	nucleus	82.97	80.97
CDX96557	Canola	nucleus	82.04	79.58
AT1G74650.1	Thale cress	nucleus	80.5	78.79
CDY64733	Canola	nucleus	44.89	70.05
KRH63348	Soybean	nucleus	53.87	54.55
CDY30719	Canola	nucleus	44.58	53.73
KRH56914	Soybean	nucleus	52.32	52.98
KRH54550	Soybean	nucleus	54.18	52.55
CDY16773	Canola	nucleus	47.99	52.54
KRH03474	Soybean	nucleus	51.7	51.38
CDY69264	Canola	nucleus	52.32	50.9
CDY31125	Canola	nucleus	41.49	50.57
CDY32135	Canola	nucleus	41.8	50.56
CDY00289	Canola	nucleus	43.34	50.54
CDX87250	Canola	nucleus	52.32	50.45
PGSC0003DMT400083076	Potato	nucleus	56.97	49.07
Solyc06g069850.2.1	Tomato	nucleus	56.66	48.54
CDY04044	Canola	nucleus	45.82	47.13
CDX86406	Canola	nucleus	47.68	46.25
CDX86405	Canola	nucleus	47.68	46.25
CDY44428	Canola	nucleus	46.44	46.01
CDX85227	Canola	nucleus	47.37	45.95
CDY00107	Canola	nucleus	47.99	45.86
CDY07778	Canola	nucleus	18.27	17.0
CDX79747	Canola	nucleus	17.96	16.67
CDX91374	Canola	nucleus	18.27	16.53
CDX74943	Canola	nucleus	18.27	16.12
CDX95031	Canola	nucleus, plastid	6.5	13.55

Protein Annotations

EnsemblPlants:CDX68173	EnsemblPlantsGene:GSBRNA2T00099429001	Gene3D:1.10.10.60	GO:A0A078BZ55	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF922	PFAM:PF00249	PFscan:PS51294	ProteinID:CDX68173	ProteinID:CDX68173.1
SEG:seg	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EDF584	MapMan:15.5.2.1	:

Description

BnaA07g22130D

Coordinates

chrLK031787:-:4252385..4253825

Molecular Weight (calculated)

36217.9 Da

IEP (calculated)

6.239

GRAVY (calculated)

-0.862

Length

323 amino acids

Sequence
(BLAST)

001: MGRSPCCEKM EVKKGPWTPE EDIILVSYIQ QHGPGSWRCV PRNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKTIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNLQQ MSSCDNNNNN NRRSVNKGQW EKKLQTDINM AKQALFQALS LDQASSSITA DPDSPKPHDH HSTTAIYASS TDKISKLLQN
201: WTSSSSSMPN TSSLSNNRSS STGEGGVLDH QYSLFSPNSE SGSVDERLNI MTETSIFKGE SKSNVDMEAT NNATTDDHGS LSLIDQWLYD DQGLVDQYDD
301: VQEDLIDVSL EGKNNGNNGQ DLS

Best Arabidopsis Sequence Match ( AT1G74650.1 )
(BLAST)

001: MGRPPCCEKI EVKKGPWTPE EDIILVSYIQ QHGPGNWRSV PANTGLLRCS KSCRLRWTNY LRPGIKRGNF TQPEEKMIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLVMMK FQNGIINENK TNLATDISSC NNNNNGCNHN KRTTNKGQWE KKLQTDINMA KQALFQALSL DQPSSLIPPD PDSPKPHHHS
201: TTTYASSTDN ISKLLQNWTS SSSSKPNTSS VSNNRSSSPG EGGLFDHHSL FSSNSESGSV DEKLNLMSET SMFKGESKPD IDMEATPTTT TTDDQGSLSL
301: IEKWLFDDQG LVQCDDSQED LIDVSLEELK

Arabidopsis Description

ATY13At1g74650 [Source:UniProtKB/TrEMBL;Acc:Q9CA52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.