CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54550	Soybean	nucleus	92.79	88.89
KRG94429	Soybean	nucleus	18.18	67.44
KRH56914	Soybean	nucleus	67.08	67.08
KRH03474	Soybean	nucleus	66.77	65.54
KRH37834	Soybean	nucleus	22.88	61.86
Solyc03g116100.2.1	Tomato	nucleus	60.81	58.26
PGSC0003DMT400050287	Potato	nucleus	61.13	57.86
AT1G74650.1	Thale cress	nucleus	57.68	55.76
CDX73103	Canola	nucleus	57.05	54.98
CDX85848	Canola	nucleus	55.49	54.63
PGSC0003DMT400083076	Potato	nucleus	63.95	54.4
Bra015899.1-P	Field mustard	nucleus	56.74	54.35
CDX96557	Canola	nucleus	56.74	54.35
CDX68173	Canola	nucleus	54.55	53.87
Solyc06g069850.2.1	Tomato	nucleus	63.32	53.58
Bra003793.1-P	Field mustard	nucleus	56.11	52.96
KRH40103	Soybean	nucleus	54.23	52.11
KRH01168	Soybean	nucleus	54.55	52.1
Bra008160.1-P	Field mustard	nucleus	54.86	51.62
KRH18478	Soybean	nucleus	53.6	51.35
KRG93528	Soybean	nucleus	53.29	50.45
KRH66212	Soybean	cytosol	23.51	49.67
KRG94936	Soybean	nucleus	49.53	45.4
KRH64960	Soybean	nucleus	49.53	43.89
KRG99949	Soybean	nucleus	21.94	19.61
KRG99521	Soybean	nucleus	21.32	19.32
KRH49100	Soybean	nucleus	21.63	19.11
KRH66092	Soybean	nucleus	21.32	19.05

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EMBL:ACUP02002667	EnsemblPlantsGene:GLYMA_04G170100	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	UniProt:I1JWV3	InterPro:IPR017930	EMBL:KC759158	EnsemblPlants:KRH63348	ProteinID:KRH63348
ProteinID:KRH63348.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF902
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001BA8E8A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:42542222..42544189

Molecular Weight (calculated)

36101.4 Da

IEP (calculated)

5.925

GRAVY (calculated)

-0.794

Length

319 amino acids

Sequence
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLMRCS KSCRLRWTNY LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLKKMQ SGGDDDDNND DKLNSCNSQI KGQWERRLQT DIHMAKQALC EALSLDKPTQ IFPETKLPST SSHNPTTTPN QTSLYASSTE
201: NIAKLLENWM KKSPNITTIT ETKPFNINNM VATGSSSSEG TQSTITCTQD HALDSLWSFN SERSCQSEEN TNLGESKPQY QEAQVPLMLL ENWLLDDAAP
301: QCNEDLMNMS LEESTEGLF

Best Arabidopsis Sequence Match ( AT3G47600.1 )
(BLAST)

001: MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMILH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKMN DSCDSTINNG LDNKDFSISN KNTTSHQSSN SSKGQWERRL QTDINMAKQA LCDALSIDKP QNPTNFSIPD LGYGPSSSSS
201: STTTTTTTTR NTNPYPSGVY ASSAENIARL LQNFMKDTPK TSVPLPVAAT EMAITTAASS PSTTEGDGEG IDHSLFSFNS IDEAEEKPKL IDHDINGLIT
301: QGSLSLFEKW LFDEQSHDMI INNMSLEGQE VLF

Arabidopsis Description

MYB94Transcription factor MYB94 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN78]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.