Factsheet for Solyc06g069850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083076	Potato	nucleus	94.69	95.2
Solyc03g116100.2.1	Tomato	nucleus	57.82	65.47
KRH63348	Soybean	nucleus	53.58	63.32
KRH56914	Soybean	nucleus	52.79	62.38
KRH54550	Soybean	nucleus	53.85	60.96
KRH03474	Soybean	nucleus	52.25	60.62
AT1G74650.1	Thale cress	nucleus	50.13	57.27
CDX85848	Canola	nucleus	48.81	56.79
CDX68173	Canola	nucleus	48.54	56.66
CDX73103	Canola	nucleus	49.07	55.89
Bra003793.1-P	Field mustard	nucleus	49.6	55.33
CDX96557	Canola	nucleus	48.81	55.26
Bra015899.1-P	Field mustard	nucleus	48.81	55.26
Solyc02g087960.2.1	Tomato	nucleus	41.91	54.11
Solyc10g081490.1.1	Tomato	nucleus	38.46	53.7
Bra008160.1-P	Field mustard	nucleus	46.95	52.21
Solyc02g067340.2.1	Tomato	nucleus	44.56	50.15
Solyc09g010840.1.1	Tomato	nucleus	18.83	19.72

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0001666	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0006629	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607
GO:GO:0009617	GO:GO:0009626	GO:GO:0009628	GO:GO:0009719	GO:GO:0009723	GO:GO:0009733
GO:GO:0009739	GO:GO:0009751	GO:GO:0009753	GO:GO:0009987	GO:GO:0010200	GO:GO:0030154
GO:GO:0042761	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K4C8F7
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF906	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc06g069850.2	EnsemblPlants:Solyc06g069850.2.1	UniParc:UPI0002766D2E	SEG:seg

Description

No Description!

Coordinates

chr6:-:43487529..43489399

Molecular Weight (calculated)

41785.4 Da

IEP (calculated)

6.245

GRAVY (calculated)

-0.912

Length

377 amino acids

Sequence
(BLAST)

001: MGRPPCCEKS GVKKGPWTPE EDIILVSYIQ EHGPGNWRNI PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNNNK KVEGHDDHQE GTSASSSSSQ SKIIKGQWER RLQTDIHTAK QALCDALSLD TTPNNKNNNN NPPPHDQDQQ PPSVQTPTTY
201: ASSAENIAKL LQNWMKNSPK STSSSSSKIT PMSSLNNNLS IGAVSSSSPS EGTVNVTPGQ GLDSIFSFNS SNNSDVSQSV SVDEGGNFST PENHNNNNNN
301: NAGIYQVESK PNLPDFKPEN GNFQEESKQN METQQVPLTM LEKWLLEDAN AQAEQEDQLM GIGMGMGMTL AETNDLF

Best Arabidopsis Sequence Match ( AT3G47600.1 )
(BLAST)

001: MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMILH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKMN DSCDSTINNG LDNKDFSISN KNTTSHQSSN SSKGQWERRL QTDINMAKQA LCDALSIDKP QNPTNFSIPD LGYGPSSSSS
201: STTTTTTTTR NTNPYPSGVY ASSAENIARL LQNFMKDTPK TSVPLPVAAT EMAITTAASS PSTTEGDGEG IDHSLFSFNS IDEAEEKPKL IDHDINGLIT
301: QGSLSLFEKW LFDEQSHDMI INNMSLEGQE VLF

Arabidopsis Description

MYB94Transcription factor MYB94 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN78]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.