Factsheet for Solyc09g010840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g065150.1.1
Solyc02g066940.2.1
Solyc02g090410.2.1
Solyc03g063140.2.1
Solyc08g005270.2.1
Solyc11g008830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37630.1	Solyc08g005270.2.1	AT1G32230.1	19548978
AT2G37630.1	Solyc03g063140.2.1	AT1G65620.1	19228338
AT2G37630.1	Solyc11g008830.1.1	AT1G65620.1	19228338
AT2G37630.1	Solyc02g066940.2.1	AT3G29390.1	16243907
AT2G37630.1	Solyc02g065150.1.1	AT5G66870.1	16243907
AT2G37630.1	Solyc02g090410.2.1	AT5G66870.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022771	Potato	nucleus	98.06	97.78
VIT_08s0007g00410.t01	Wine grape	nucleus	79.72	80.17
KRG99949	Soybean	nucleus	74.44	75.07
KRH49100	Soybean	nucleus	73.89	73.68
GSMUA_Achr7P10550_001	Banana	nucleus	60.28	70.92
Bra000011.1-P	Field mustard	nucleus	68.06	70.61
CDY07778	Canola	nucleus	68.06	70.61
CDX91374	Canola	nucleus	68.61	69.19
CDX79747	Canola	nucleus	66.67	68.97
GSMUA_Achr9P28330_001	Banana	nucleus	61.11	68.32
AT2G37630.1	Thale cress	nucleus	69.44	68.12
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	31.39	68.07
KRG99521	Soybean	nucleus	66.39	67.9
Bra005177.1-P	Field mustard	nucleus	68.06	67.87
KRH66092	Soybean	nucleus	67.22	67.79
CDX74943	Canola	nucleus	68.33	67.21
TraesCS5A01G079100.1	Wheat	nucleus	60.0	62.97
Os12t0572000-01	Rice	nucleus	58.06	61.11
GSMUA_Achr9P03320_001	Banana	nucleus	46.67	60.87
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	60.56	60.39
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	60.56	60.06
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	60.28	59.94
Zm00001d030737_P001	Maize	nucleus	56.39	54.86
EES17234	Sorghum	nucleus	56.94	53.81
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	32.78	40.0
GSMUA_Achr5P29070_001	Banana	nucleus	61.39	37.59
HORVU6Hr1G071420.2	Barley	plastid	16.67	32.61
Solyc03g116100.2.1	Tomato	nucleus	20.83	22.52
Solyc02g087960.2.1	Tomato	nucleus	17.5	21.58
Solyc10g081490.1.1	Tomato	nucleus	16.11	21.48
Solyc02g067340.2.1	Tomato	nucleus	18.33	19.7
Solyc06g069850.2.1	Tomato	nucleus	19.72	18.83

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	ncoils:Coil	GO:GO:0000793	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0006351	GO:GO:0006357	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008356	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009615	GO:GO:0009628
GO:GO:0009651	GO:GO:0009653	GO:GO:0009719	GO:GO:0009733	GO:GO:0009739	GO:GO:0009751
GO:GO:0009753	GO:GO:0009944	GO:GO:0009965	GO:GO:0009987	GO:GO:0010338	GO:GO:0030154
GO:GO:0042742	GO:GO:0042803	GO:GO:0043565	GO:GO:0044212	GO:GO:0045088	GO:GO:0045892
GO:GO:0046686	GO:GO:0050832	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K4CRB0	InterPro:Myb_dom
PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF457	InterPro:RS2/AS1	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc09g010840.1	EnsemblPlants:Solyc09g010840.1.1	UniParc:UPI000276AF33	SEG:seg

Description

No Description!

Coordinates

chr9:-:4148534..4149616

Molecular Weight (calculated)

41182.1 Da

IEP (calculated)

9.755

GRAVY (calculated)

-0.878

Length

360 amino acids

Sequence
(BLAST)

001: MRERQRWRAE EDALLRAYVR QYGPKEWHLV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG SLTEDEQRLV IQLQAKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE QKENNKVVDP VDEGKYDHIL ETFAEKIVKE RSVPGLLMAT SNGGFLHADA STPTPQTLLP PWLSNSSAPS TVRSSSPSVT LSLSPSTVPP
201: TPTPGIPWLQ TDRGPDNAPL ILSSFPHHSV APCGENPFIT ELAECCKDLD EGHRTWTAHK KEAAWRLRRV ELQLESEKAS KVREKMEEIE AKMKALREEQ
301: KATLDRIEAE YKEQLAGLRR DAEAKEQKLA EQWTSKHMRL AKFLEQMGCQ SRLAEPNGGR

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.