Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G093100.1 | Wheat | mitochondrion, nucleus | 98.9 | 99.45 |
| TraesCS5A01G079100.1 | Wheat | nucleus | 93.39 | 98.83 |
| HORVU5Hr1G021230.1 | Barley | mitochondrion, nucleus | 96.69 | 96.96 |
| HORVU7Hr1G077530.1 | Barley | mitochondrion, nucleus | 42.7 | 93.37 |
| Os12t0572000-01 | Rice | nucleus | 69.7 | 73.98 |
| Zm00001d030737_P001 | Maize | nucleus | 73.55 | 72.16 |
| EES17234 | Sorghum | nucleus | 73.55 | 70.08 |
| GSMUA_Achr7P10550_001 | Banana | nucleus | 58.68 | 69.61 |
| GSMUA_Achr9P28330_001 | Banana | nucleus | 57.58 | 64.91 |
| VIT_08s0007g00410.t01 | Wine grape | nucleus | 63.91 | 64.8 |
| KRG99949 | Soybean | nucleus | 61.98 | 63.03 |
| KRH49100 | Soybean | nucleus | 61.98 | 62.33 |
| HORVU5Hr1G112000.2 | Barley | extracellular, nucleus | 49.59 | 61.02 |
| Solyc09g010840.1.1 | Tomato | nucleus | 60.06 | 60.56 |
| PGSC0003DMT400022771 | Potato | nucleus | 60.06 | 60.39 |
| Bra000011.1-P | Field mustard | nucleus | 57.3 | 59.94 |
| CDY07778 | Canola | nucleus | 57.3 | 59.94 |
| KRG99521 | Soybean | nucleus | 57.85 | 59.66 |
| GSMUA_Achr9P03320_001 | Banana | nucleus | 44.9 | 59.06 |
| KRH66092 | Soybean | nucleus | 57.58 | 58.54 |
| CDX91374 | Canola | nucleus | 57.58 | 58.54 |
| CDX79747 | Canola | nucleus | 55.92 | 58.33 |
| Bra005177.1-P | Field mustard | nucleus | 56.47 | 56.79 |
| AT2G37630.1 | Thale cress | nucleus | 57.3 | 56.68 |
| CDX74943 | Canola | nucleus | 56.75 | 56.28 |
| HORVU6Hr1G071420.2 | Barley | plastid | 26.45 | 52.17 |
| GSMUA_Achr5P29070_001 | Banana | nucleus | 59.23 | 36.56 |
| TraesCS5B01G556300.1 | Wheat | nucleus | 18.18 | 23.4 |
| TraesCS5B01G226100.1 | Wheat | nucleus | 19.56 | 22.4 |
| TraesCS2B01G183100.1 | Wheat | nucleus | 19.28 | 22.36 |
| TraesCS4B01G129100.1 | Wheat | nucleus | 16.53 | 19.93 |
| TraesCS5B01G141200.1 | Wheat | nucleus | 17.63 | 19.57 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | ncoils:Coil | GO:GO:0000793 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006950 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008356 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009615 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009733 |
| GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009753 | GO:GO:0009944 | GO:GO:0009965 | GO:GO:0009987 |
| GO:GO:0010338 | GO:GO:0042742 | GO:GO:0042803 | GO:GO:0043565 | GO:GO:0045088 | GO:GO:0045892 |
| GO:GO:0046686 | GO:GO:0050832 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF13921 |
| PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF457 | InterPro:RS2/AS1 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS5B01G086900 | EnsemblPlants:TraesCS5B01G086900.1 | TIGR:cd00167 | SEG:seg | : |
Description
No Description!
Coordinates
chr5B:-:110418929..110420020
Molecular Weight (calculated)
41704.8 Da
IEP (calculated)
9.970
GRAVY (calculated)
-0.874
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMKERQRWR PEEDAILRSY VRQYGPREWN LVAQRMNVPL DRDAKSCLER WKNYLRPGIK KGSLTDDEQR LVIRLQAKHG NKWKKIAAEV PGRTAKRLGK
101: WWEVFKEKQQ REIRDSRRPP PEPSPDERGR YEWLLENFAE KLVKERQQVG VGATPLHHHL MAAPMLPPWM SSTATNGAPV SPAPPSPSVT LSLASAVVPP
201: PTAAPWMQQQ QQMAEDGAAF GFARPPPAPG MVPDAPQAAL AELAECCREL DEGHRAWAAH RKEASWRLKR VELQLESERA CRRREAAEEF EAKMRALWEE
301: QAAAVERLEA EYREKVAGLR RDAEIKEQKM AEQWAAKHAR LTKFLEQVGS SCRRWPPGEM NGR
101: WWEVFKEKQQ REIRDSRRPP PEPSPDERGR YEWLLENFAE KLVKERQQVG VGATPLHHHL MAAPMLPPWM SSTATNGAPV SPAPPSPSVT LSLASAVVPP
201: PTAAPWMQQQ QQMAEDGAAF GFARPPPAPG MVPDAPQAAL AELAECCREL DEGHRAWAAH RKEASWRLKR VELQLESERA CRRREAAEEF EAKMRALWEE
301: QAAAVERLEA EYREKVAGLR RDAEIKEQKM AEQWAAKHAR LTKFLEQVGS SCRRWPPGEM NGR
001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP
Arabidopsis Description
AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.