Factsheet for TraesCS5B01G226100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G234800.1	Wheat	nucleus	99.05	98.74
TraesCS5A01G227400.1	Wheat	nucleus	98.74	98.43
GSMUA_Achr8P16920_001	Banana	nucleus	29.97	84.07
Zm00001d020457_P001	Maize	nucleus	79.81	83.77
KXG35628	Sorghum	nucleus	84.23	81.4
Zm00001d005760_P001	Maize	nucleus	82.97	80.67
Os08t0437300-00	Rice	nucleus	55.52	67.18
GSMUA_Achr7P21010_001	Banana	nucleus	48.58	57.25
GSMUA_Achr4P00480_001	Banana	nucleus	47.32	56.6
GSMUA_Achr6P10700_001	Banana	nucleus	45.11	55.86
GSMUA_Achr8P01400_001	Banana	nucleus	45.43	54.75
GSMUA_Achr2P22010_001	Banana	nucleus	43.53	54.55
GSMUA_Achr6P02690_001	Banana	nucleus	42.27	53.6
GSMUA_Achr7P18080_001	Banana	nucleus	45.11	52.96
TraesCS2B01G183100.1	Wheat	nucleus	50.16	50.8
Os07t0484700-01	Rice	nucleus	24.92	47.31
TraesCS5B01G556300.1	Wheat	nucleus	41.32	46.45
TraesCS4B01G129100.1	Wheat	nucleus	43.53	45.85
TraesCS5B01G141200.1	Wheat	nucleus	44.16	42.81
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	22.4	19.56

Protein Annotations

EnsemblPlants:TraesCS5B01G226100.1	EnsemblPlantsGene:TraesCS5B01G226100	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF682	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:402750477..402751661

Molecular Weight (calculated)

33206.9 Da

IEP (calculated)

7.503

GRAVY (calculated)

-0.517

Length

317 amino acids

Sequence
(BLAST)

001: MGRPPCCDKV GVKKGPWTPE EDLMLVSYIQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY LRPGIKRGNF NDQEEKLIVH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKMQ DAGGNDGGSE GAGAAGVGGG VAKAAAPKGQ WERRLQTDIH TARQALRDAL SLEPSQPAAL AAPALPTPPG SVTTYASSAD
201: NIARLLEGWM RPGSSSKGPE ASGSTSSTTA TTRQQPQCSW DGAASASASH SGGAAGAAAA QTPEGSTETS KLAGAGAGGA PPAFSMLENW LLDDGMGHGE
301: AGLMDDVVPL GDPSEFF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.