CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005760_P001	Maize	nucleus	93.29	93.86
Zm00001d020457_P001	Maize	nucleus	85.06	92.38
GSMUA_Achr8P16920_001	Banana	nucleus	29.27	84.96
TraesCS5D01G234800.1	Wheat	nucleus	82.01	84.59
TraesCS5A01G227400.1	Wheat	nucleus	81.71	84.28
TraesCS5B01G226100.1	Wheat	nucleus	81.4	84.23
OQU93155	Sorghum	nucleus	23.78	58.65
EES13898	Sorghum	nucleus	53.96	58.22
GSMUA_Achr7P21010_001	Banana	nucleus	46.95	57.25
GSMUA_Achr4P00480_001	Banana	nucleus	46.04	56.98
GSMUA_Achr6P10700_001	Banana	nucleus	44.21	56.64
GSMUA_Achr8P01400_001	Banana	nucleus	44.51	55.51
GSMUA_Achr2P22010_001	Banana	nucleus	41.77	54.15
GSMUA_Achr6P02690_001	Banana	nucleus	41.16	54.0
GSMUA_Achr7P18080_001	Banana	nucleus	43.9	53.33
EES13899	Sorghum	nucleus	47.56	50.98
OQU90312	Sorghum	nucleus	50.0	50.0
KXG39272	Sorghum	nucleus	44.82	46.08
EES09957	Sorghum	nucleus	40.24	44.59
KXG22874	Sorghum	nucleus	40.24	41.38
KXG22875	Sorghum	nucleus	38.72	39.81
OQU82780	Sorghum	nucleus	40.85	34.99
EES17234	Sorghum	nucleus	19.51	16.8

Protein Annotations

EnsemblPlants:KXG35628	EnsemblPlantsGene:SORBI_3002G201000	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF682	PFAM:PF00249	PFscan:PS51294	ProteinID:KXG35628	ProteinID:KXG35628.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00081ACFE9	UniProt:A0A1B6QCI4	MapMan:15.5.2.1	:

Description

hypothetical protein

Coordinates

chr2:+:59093472..59097524

Molecular Weight (calculated)

34208.2 Da

IEP (calculated)

7.435

GRAVY (calculated)

-0.545

Length

328 amino acids

Sequence
(BLAST)

001: MGRPPCCDKV GVKKGPWTPE EDLMLVSYVQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY LRPGIKRGNF TDQEEKLIIH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKMQ AGEGDGGEDG GAAGASEGGA GAGATAGGGG KRPAVPKGQW ERRLQTDIHT ARQALRDALS LEPSAQPLAP AKVEPLPTTP
201: PGCTTYASSA ENIARLLEGW LRPGGGGGKG PEASGSTSTT ATTQQRPQCS GEGAASASAS HSGGAAANTA AQTPECSTET SKMAGAAGSA PPAFSMLESW
301: LLDDGGMGHG EVGLMTDVVP LGDPSEFF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.