CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93535	Canola	nucleus	19.58	90.36
CDX95030	Canola	nucleus	25.33	85.09
Zm00001d052397_P001	Maize	nucleus	72.85	81.82
KXG22874	Sorghum	nucleus	51.96	62.38
TraesCS5A01G142500.1	Wheat	nucleus	50.39	59.75
HORVU5Hr1G045540.1	Barley	nucleus	50.91	59.63
TraesCS5D01G149600.1	Wheat	nucleus	50.91	59.63
TraesCS5B01G141200.1	Wheat	nucleus	50.65	59.33
Solyc10g081490.1.1	Tomato	nucleus	41.25	58.52
KRH37834	Soybean	nucleus	18.02	58.47
PGSC0003DMT400072272	Potato	nucleus	40.73	57.35
HORVU5Hr1G045550.1	Barley	nucleus	51.7	54.7
Os11t0128500-01	Rice	nucleus	43.6	54.22
Os12t0125000-01	Rice	nucleus	43.34	53.38
Bra030743.1-P	Field mustard	nucleus	36.81	53.21
CDY31125	Canola	nucleus	36.81	53.21
CDY32135	Canola	nucleus	36.55	52.43
KXG22875	Sorghum	nucleus	43.08	51.72
TraesCS4D01G123300.1	Wheat	nucleus	40.47	51.67
TraesCS4B01G129100.1	Wheat	nucleus	40.47	51.49
TraesCS4A01G189700.1	Wheat	nucleus	40.73	51.15
OQU93155	Sorghum	nucleus	17.75	51.13
AT1G08810.1	Thale cress	nucleus	37.08	50.71
HORVU4Hr1G023510.2	Barley	nucleus	39.95	50.66
Bra018598.1-P	Field mustard	nucleus	36.81	50.0
GSMUA_Achr7P21670_001	Banana	nucleus	37.08	49.13
VIT_08s0056g00800.t01	Wine grape	nucleus	37.86	45.17
EES09957	Sorghum	nucleus	34.46	44.59
EES13898	Sorghum	nucleus	33.94	42.76
GSMUA_Achr10P...	Banana	nucleus	34.73	42.22
OQU90312	Sorghum	nucleus	35.51	41.46
KXG35628	Sorghum	nucleus	34.99	40.85
KXG39272	Sorghum	nucleus	33.94	40.75
EES13899	Sorghum	nucleus	32.11	40.2
CDX95031	Canola	nucleus, plastid	9.14	22.58
EES17234	Sorghum	nucleus	15.4	15.49

Protein Annotations

EnsemblPlants:OQU82780	EnsemblPlantsGene:SORBI_3005G020200	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF909	PFAM:PF00249	PFscan:PS51294	ProteinID:OQU82780	ProteinID:OQU82780.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000B42585C	UniProt:A0A1Z5RG87	MapMan:15.5.2.1	:

Description

hypothetical protein

Coordinates

chr5:-:1873305..1874937

Molecular Weight (calculated)

40618.9 Da

IEP (calculated)

7.436

GRAVY (calculated)

-0.395

Length

383 amino acids

Sequence
(BLAST)

001: MGADLLATIN IATGRGREGA AGAAMGRPPC CDKEGIKKGP WTPEEDIILV SYIQEHGPGN WRSVPINTGL MRCSKSCRLR WTNYLRPGIR RGNFTPHEEG
101: IIVHLQSLLG NRWAAIASYL PQRTDNDIKN YWNTHLKKKL KKHQAIGAIF APPPPPASDS SSSSSIVVMP TTTVGGGGGG CHVHHHHRDM LGGGTNLLVS
201: RDSYYARPSG GAGCCSNPAE VAQLIARRSP FAADGGGDSS SSSYASSMDN ISKLLTGFMK QQQSSPSPDA AAAADIKPSS AAHVNNHHAL LSSSSSFHHM
301: SAAGTGSGTP PAAACFNDMT MPSPPHVQQQ AALMGHHGGY DDDPRQASPL SPIEKWLFEE AAEQVGDLMD LSEDCCSSVP MMF

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.