CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053124_P001	Maize	nucleus	87.5	89.62
Os11t0558200-01	Rice	nucleus	71.62	64.24
HORVU5Hr1G123880.1	Barley	nucleus	52.7	55.32
TraesCS5B01G556300.1	Wheat	nucleus	52.7	55.32
TraesCS4A01G322200.1	Wheat	nucleus	52.36	54.96
TraesCS5D01G552200.1	Wheat	nucleus	52.03	54.61
OQU93155	Sorghum	nucleus	21.96	48.87
KXG22874	Sorghum	nucleus	43.92	40.75
KXG35628	Sorghum	nucleus	44.59	40.24
EES13898	Sorghum	nucleus	39.19	38.16
KXG22875	Sorghum	nucleus	40.54	37.62
OQU90312	Sorghum	nucleus	40.88	36.89
KXG39272	Sorghum	nucleus	38.51	35.74
EES13899	Sorghum	nucleus	36.82	35.62
OQU82780	Sorghum	nucleus	44.59	34.46
EES17234	Sorghum	nucleus	19.93	15.49

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8061725	UniProt:C5Y4R2	ncoils:Coil	EnsemblPlants:EES09957
ProteinID:EES09957	ProteinID:EES09957.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009414	GO:GO:0009416	GO:GO:0009628	GO:GO:0009719	GO:GO:0009737
GO:GO:0009751	GO:GO:0009753	GO:GO:0009987	GO:GO:0010118	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF726	InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3005G155900	SUPFAM:SSF46689
UniParc:UPI0001A86B7B	RefSeq:XP_002450969.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:62727719..62729655

Molecular Weight (calculated)

32150.2 Da

IEP (calculated)

6.606

GRAVY (calculated)

-0.335

Length

296 amino acids

Sequence
(BLAST)

001: MGRPPCCDNG VGVKKGPWTP EEDIVLVSYI QQHGPGNWRS VPENTGLMRC SKSCRLRWTN YLRPGIKRGN FTPHEEGIII HLQALLGNKW AAIASYLPQR
101: TDNDIKNYWN THLKKKVKRL QQPAAAESFQ TTAAASNAVT CSPNYYSSSS SSHHSLQGMQ QPMSSYPNTA CSSSTPSNHE TTTTTGVSDL FQTWMMRPSP
201: LAAAAAAADN CKIAMQEFQE EQASIVCQEQ MVMTGGGDVN NKSSALEMMV APAVMGASTA TFSLLEDWLL DDMPGQVAMD GLMGISAGCC ADPIMF

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.