Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G322200.1 | Wheat | nucleus | 92.55 | 92.55 |
| TraesCS5B01G556300.1 | Wheat | nucleus | 92.2 | 92.2 |
| TraesCS5D01G552200.1 | Wheat | nucleus | 90.78 | 90.78 |
| Zm00001d053124_P001 | Maize | nucleus | 55.67 | 54.33 |
| EES09957 | Sorghum | nucleus | 55.32 | 52.7 |
| Os11t0558200-01 | Rice | nucleus | 55.67 | 47.58 |
| HORVU4Hr1G023510.2 | Barley | nucleus | 43.97 | 41.06 |
| HORVU5Hr1G045540.1 | Barley | nucleus | 46.81 | 40.37 |
| HORVU5Hr1G045550.1 | Barley | nucleus | 46.81 | 36.46 |
| HORVU2Hr1G028470.1 | Barley | nucleus, plastid | 31.91 | 35.71 |
| HORVU7Hr1G077530.1 | Barley | mitochondrion, nucleus | 17.38 | 29.52 |
| HORVU5Hr1G021230.1 | Barley | mitochondrion, nucleus | 23.76 | 18.51 |
| HORVU5Hr1G112000.2 | Barley | extracellular, nucleus | 12.41 | 11.86 |
| HORVU6Hr1G071420.2 | Barley | plastid | 5.67 | 8.7 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G123880.1 | EnsemblPlantsGene:HORVU5Hr1G123880 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF726 | PFAM:PF00249 | PFscan:PS51294 | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0002965A30 |
| UniProt:M0V3E3 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:664849928..664851619
Molecular Weight (calculated)
31121.8 Da
IEP (calculated)
7.848
GRAVY (calculated)
-0.495
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPPCCDNG GASVKKGPWT PEEDIILVSY IQQHGPGNWR SVPENTGLMR CSKSCRLRWT NYLRPGIKRG NFTQHEEGII IHLQALLGNK WAAIASYLPQ
101: RTDNDIKNYW NTHLKKKVKR LQQQAHPTDH FFQHTSAATN AAEQTTSMNY YNPSSSNFDS ARQDAMGYTE TTTGNVAPAT MAVTKLFQSW MPKAPSPEMV
201: DYKAMVAMQE LRRDGEASAA VSMTSGNRFS SSEILAGRGE AATATTFSVL ENWLLDDMAP GQAAMDGLMD ISAGCCANPI MF
101: RTDNDIKNYW NTHLKKKVKR LQQQAHPTDH FFQHTSAATN AAEQTTSMNY YNPSSSNFDS ARQDAMGYTE TTTGNVAPAT MAVTKLFQSW MPKAPSPEMV
201: DYKAMVAMQE LRRDGEASAA VSMTSGNRFS SSEILAGRGE AATATTFSVL ENWLLDDMAP GQAAMDGLMD ISAGCCANPI MF
001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF
Arabidopsis Description
MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.