Factsheet for HORVU5Hr1G045550.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G045540.1	Barley	nucleus	90.33	100.0
TraesCS5A01G142500.1	Wheat	nucleus	83.98	94.12
TraesCS5D01G149600.1	Wheat	nucleus	84.81	93.88
TraesCS5B01G141200.1	Wheat	nucleus	84.81	93.88
CDX93535	Canola	nucleus	19.61	85.54
CDX95030	Canola	nucleus	25.69	81.58
KRH37834	Soybean	nucleus	18.78	57.63
Zm00001d052397_P001	Maize	nucleus	51.93	55.13
Solyc10g081490.1.1	Tomato	nucleus	40.88	54.81
PGSC0003DMT400072272	Potato	nucleus	40.33	53.68
Bra030743.1-P	Field mustard	nucleus	38.12	52.08
CDY31125	Canola	nucleus	38.12	52.08
OQU82780	Sorghum	nucleus	54.7	51.7
CDY32135	Canola	nucleus	37.85	51.31
Os11t0128500-01	Rice	nucleus	43.65	51.3
Os12t0125000-01	Rice	nucleus	43.65	50.8
HORVU4Hr1G023510.2	Barley	nucleus	41.99	50.33
AT1G08810.1	Thale cress	nucleus	37.85	48.93
GSMUA_Achr7P21670_001	Banana	nucleus	38.67	48.44
Bra018598.1-P	Field mustard	nucleus	37.29	47.87
HORVU5Hr1G123880.1	Barley	nucleus	36.46	46.81
VIT_08s0056g00800.t01	Wine grape	nucleus	38.4	43.3
GSMUA_Achr10P...	Banana	nucleus	34.25	39.37
HORVU2Hr1G028470.1	Barley	nucleus, plastid	27.07	38.89
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	12.98	28.31
CDX95031	Canola	nucleus, plastid	9.12	21.29
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	17.13	17.13
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	7.46	9.15
HORVU6Hr1G071420.2	Barley	plastid	2.49	4.89

Protein Annotations

EnsemblPlants:HORVU5Hr1G045550.1	EnsemblPlantsGene:HORVU5Hr1G045550	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF909	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI000B48507E	UniProt:A0A287R141	MapMan:15.5.2.1	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:352135599..352137252

Molecular Weight (calculated)

40009.4 Da

IEP (calculated)

6.826

GRAVY (calculated)

-0.478

Length

362 amino acids

Sequence
(BLAST)

001: PEASCSLQAR ARKTIELPEG EEEIERRKGA RDRSIMGRPP CCDKVGVKKG PWTPEEDIIL VSYIQENGPG NWRAVPINTG LMRCSKSCRL RWTNYLRPGI
101: RRGNFTTHEE GIIVHLQSLL GNRWAAIASY LPQRTDNDIK NYWNTHLKKK LKKQQALGAI FAPPPPPSSS AETAANLPAA VHLDHHHHRY HHDAIAASSS
201: TVDHGCYAAC SNPEVTQQHT TITMRRSPFA DVATDCSSSS YASSMDNISR LLDGFMKSSP PTATDVKPNI AVFSDPFMSF DRMTGAGAGL AFVPGVQQQQ
301: QQMPVLMGGM IYDDEATGQQ QQLQHQLPLC SIEKWLLDEA AEQVADLMEL SDGDCSSLPL LY

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.