Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93535 | Canola | nucleus | 30.34 | 97.59 |
| CDY31125 | Canola | nucleus | 95.51 | 96.23 |
| CDX95030 | Canola | nucleus | 39.33 | 92.11 |
| AT1G08810.1 | Thale cress | nucleus | 85.39 | 81.43 |
| PGSC0003DMT400072272 | Potato | nucleus | 59.18 | 58.09 |
| Solyc10g081490.1.1 | Tomato | nucleus | 58.43 | 57.78 |
| GSMUA_Achr9P17050_001 | Banana | nucleus | 53.93 | 51.61 |
| GSMUA_Achr3P09450_001 | Banana | nucleus | 53.18 | 49.13 |
| GSMUA_Achr10P... | Banana | nucleus | 51.69 | 47.92 |
| CDY30719 | Canola | nucleus | 47.94 | 47.76 |
| GSMUA_Achr5P07720_001 | Banana | nucleus | 52.43 | 47.46 |
| CDY00289 | Canola | nucleus | 48.69 | 46.93 |
| VIT_08s0056g00800.t01 | Wine grape | nucleus | 56.18 | 46.73 |
| GSMUA_Achr10P... | Banana | nucleus | 49.44 | 46.15 |
| Os11t0128500-01 | Rice | nucleus | 53.18 | 46.1 |
| Os12t0125000-01 | Rice | nucleus | 53.56 | 45.98 |
| Zm00001d023282_P001 | Maize | nucleus | 49.44 | 45.67 |
| TraesCS4D01G123300.1 | Wheat | nucleus | 51.31 | 45.67 |
| CDY16773 | Canola | nucleus | 50.19 | 45.42 |
| TraesCS4B01G129100.1 | Wheat | nucleus | 50.94 | 45.18 |
| HORVU4Hr1G023510.2 | Barley | nucleus | 50.94 | 45.03 |
| TraesCS4A01G189700.1 | Wheat | nucleus | 50.94 | 44.59 |
| KRG94936 | Soybean | nucleus | 57.68 | 44.25 |
| CDY04044 | Canola | nucleus | 50.56 | 42.99 |
| KXG22874 | Sorghum | nucleus | 51.31 | 42.95 |
| TraesCS5A01G142500.1 | Wheat | nucleus | 51.69 | 42.72 |
| KRH64960 | Soybean | nucleus | 57.3 | 42.5 |
| CDX85848 | Canola | nucleus | 51.31 | 42.28 |
| HORVU5Hr1G045540.1 | Barley | nucleus | 51.31 | 41.9 |
| CDX68173 | Canola | nucleus | 50.56 | 41.8 |
| CDX86405 | Canola | nucleus | 52.06 | 41.74 |
| CDX86406 | Canola | nucleus | 52.06 | 41.74 |
| CDY44428 | Canola | nucleus | 50.94 | 41.72 |
| CDX73103 | Canola | nucleus | 51.69 | 41.69 |
| TraesCS5D01G149600.1 | Wheat | nucleus | 50.94 | 41.59 |
| TraesCS5B01G141200.1 | Wheat | nucleus | 50.94 | 41.59 |
| CDX85227 | Canola | nucleus | 51.69 | 41.44 |
| CDY00107 | Canola | nucleus | 52.43 | 41.42 |
| CDX96557 | Canola | nucleus | 51.31 | 41.14 |
| Zm00001d052397_P001 | Maize | nucleus | 52.43 | 41.06 |
| CDX87250 | Canola | nucleus | 50.94 | 40.6 |
| CDY69264 | Canola | nucleus | 50.19 | 40.36 |
| KXG22875 | Sorghum | nucleus | 46.07 | 38.56 |
| HORVU5Hr1G045550.1 | Barley | nucleus | 51.31 | 37.85 |
| OQU82780 | Sorghum | nucleus | 52.43 | 36.55 |
| Zm00001d023284_P001 | Maize | nucleus | 37.83 | 35.44 |
| Zm00001d023287_P001 | Maize | nucleus | 38.58 | 34.45 |
| CDX95031 | Canola | nucleus, plastid | 15.73 | 27.1 |
| CDY64733 | Canola | nucleus | 13.86 | 17.87 |
| CDY07778 | Canola | nucleus | 19.85 | 15.27 |
| CDX91374 | Canola | nucleus | 20.22 | 15.13 |
| CDX74943 | Canola | nucleus | 20.6 | 15.03 |
| CDX79747 | Canola | nucleus | 19.48 | 14.94 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078H0C9 | UniProt:A0A078H0C9 | EnsemblPlants:CDY32135 | ProteinID:CDY32135 |
| ProteinID:CDY32135.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00051502001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF726 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EAEB94 | SEG:seg |
Description
BnaCnng06440DBnaCnng06440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0C9]
Coordinates
chrLK032288:-:37255..38273
Molecular Weight (calculated)
30465.7 Da
IEP (calculated)
6.511
GRAVY (calculated)
-0.896
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPPCCDKI RIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSE SEERSISENI TLQTSATRNA INHRSTYASS TENISRLLEG WMRASPKSST ASFLEQKVQN RTNDLMDHHN DESPYEQGSW
201: DQGFHVHPKK SEENVKCDHD VQEDGDGDGD GDATPPLTFI EKWLLEETNT GGQMEVMSPL MELSNML
101: DNDIKNYWNT HLKKKLNKSE SEERSISENI TLQTSATRNA INHRSTYASS TENISRLLEG WMRASPKSST ASFLEQKVQN RTNDLMDHHN DESPYEQGSW
201: DQGFHVHPKK SEENVKCDHD VQEDGDGDGD GDATPPLTFI EKWLLEETNT GGQMEVMSPL MELSNML
001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML
Arabidopsis Description
MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.