Factsheet for Os12t0125000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0128500-01	Rice	nucleus	95.18	96.1
CDX93535	Canola	nucleus	24.12	90.36
CDX95030	Canola	nucleus	31.19	85.09
Os07t0629000-01	Rice	nucleus	35.05	71.71
TraesCS4B01G129100.1	Wheat	nucleus	63.34	65.45
TraesCS4D01G123300.1	Wheat	nucleus	62.7	65.0
TraesCS4A01G189700.1	Wheat	nucleus	63.34	64.59
HORVU4Hr1G023510.2	Barley	nucleus	62.7	64.57
KRH37834	Soybean	nucleus	21.86	57.63
Solyc10g081490.1.1	Tomato	nucleus	47.91	55.19
PGSC0003DMT400072272	Potato	nucleus	47.91	54.78
CDY31125	Canola	nucleus	46.3	54.34
Bra030743.1-P	Field mustard	nucleus	46.3	54.34
CDY32135	Canola	nucleus	45.98	53.56
AT1G08810.1	Thale cress	nucleus	46.95	52.14
Zm00001d052397_P001	Maize	nucleus	54.02	49.27
TraesCS5D01G149600.1	Wheat	nucleus	51.13	48.62
TraesCS5A01G142500.1	Wheat	nucleus	50.48	48.61
HORVU5Hr1G045540.1	Barley	nucleus	50.8	48.32
TraesCS5B01G141200.1	Wheat	nucleus	50.48	48.01
Bra018598.1-P	Field mustard	nucleus	43.41	47.87
GSMUA_Achr7P21670_001	Banana	nucleus	43.09	46.37
Os08t0437300-00	Rice	nucleus	38.59	45.8
VIT_08s0056g00800.t01	Wine grape	nucleus	47.27	45.79
HORVU5Hr1G045550.1	Barley	nucleus	50.8	43.65
OQU82780	Sorghum	nucleus	53.38	43.34
Os07t0484700-01	Rice	nucleus	22.51	41.92
Os11t0558200-01	Rice	nucleus	43.73	41.21
GSMUA_Achr10P...	Banana	nucleus	39.87	39.37
CDX95031	Canola	nucleus, plastid	9.0	18.06
Os12t0572000-01	Rice	nucleus	17.68	16.08

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:4351379	ProteinID:ABA96337.1	EMBL:AK061437	ProteinID:BAF29061.1
ProteinID:BAT15685.1	ProteinID:EAZ19502.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	EnsemblPlantsGene:Os12g0125000	EnsemblPlants:Os12t0125000-01	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF909	UniProt:Q2QYC1	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00000ACE30
RefSeq:XP_015619015.1	SEG:seg	:	:	:	:

Description

myb transcription factor 11, transcription factor MYB11Myb factor. (Os12t0125000-01)

Coordinates

chr12:-:1200746..1201965

Molecular Weight (calculated)

34064.9 Da

IEP (calculated)

5.838

GRAVY (calculated)

-0.479

Length

311 amino acids

Sequence
(BLAST)

001: MGRPPCCDKE GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PINTGLMRCS KSCRLRWTNY LRPGIKRGNF TAHEEGIIVH LQSLLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLAAAA NSTSSSNRHP IFADATFPSA AGGSYTVSSN SDVTQMAAIA RRSPFADCPS SSYASSMDNI SKLLDGFMKT NSPSPPPPPL
201: QHYDSGYYDD VKPAVDVGGN PLLSSFDCMS GADLDCCFDV HQQHQQQQPA SFMEYGGYGG GYGDESKQQL MNQAAPPLSS IEKWLFDEAA AEQVADLMDL
301: SDGCCSVPMM F

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.