Factsheet for VIT_08s0056g00800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93535	Canola	nucleus	25.23	97.59
Solyc10g081490.1.1	Tomato	nucleus	50.16	59.63
PGSC0003DMT400072272	Potato	nucleus	50.16	59.19
Bra030743.1-P	Field mustard	nucleus	47.04	56.98
CDY31125	Canola	nucleus	47.04	56.98
CDY32135	Canola	nucleus	46.73	56.18
GSMUA_Achr9P17050_001	Banana	nucleus	47.98	55.2
AT1G08810.1	Thale cress	nucleus	47.98	55.0
GSMUA_Achr3P09450_001	Banana	nucleus	48.29	53.63
Bra018598.1-P	Field mustard	nucleus	46.42	52.84
KRG94936	Soybean	nucleus	56.7	52.3
KRH64960	Soybean	nucleus	56.39	50.28
GSMUA_Achr5P07720_001	Banana	nucleus	45.79	49.83
GSMUA_Achr10P...	Banana	nucleus	43.61	48.95
GSMUA_Achr10P...	Banana	nucleus	43.61	48.61
Os11t0128500-01	Rice	nucleus	45.79	47.73
VIT_14s0108g00830.t01	Wine grape	nucleus	48.6	47.71
Os12t0125000-01	Rice	nucleus	45.79	47.27
TraesCS4D01G123300.1	Wheat	nucleus	43.93	47.0
VIT_17s0000g06190.t01	Wine grape	nucleus	44.86	46.91
TraesCS4A01G189700.1	Wheat	nucleus	44.24	46.56
TraesCS4B01G129100.1	Wheat	nucleus	43.61	46.51
Zm00001d023282_P001	Maize	nucleus	41.43	46.02
HORVU4Hr1G023510.2	Barley	nucleus	42.99	45.7
KXG22874	Sorghum	nucleus	43.61	43.89
TraesCS5A01G142500.1	Wheat	nucleus	43.3	43.03
TraesCS5D01G149600.1	Wheat	nucleus	43.61	42.81
TraesCS5B01G141200.1	Wheat	nucleus	43.3	42.51
HORVU5Hr1G045540.1	Barley	nucleus	43.3	42.51
Zm00001d052397_P001	Maize	nucleus	44.86	42.23
KXG22875	Sorghum	nucleus	40.19	40.44
HORVU5Hr1G045550.1	Barley	nucleus	43.3	38.4
OQU82780	Sorghum	nucleus	45.17	37.86
Zm00001d023284_P001	Maize	nucleus	32.71	36.84
Zm00001d023287_P001	Maize	nucleus	33.96	36.45
VIT_08s0007g00410.t01	Wine grape	nucleus	18.69	16.76
VIT_14s0083g00120.t01	Wine grape	nucleus	19.63	16.41

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100233072	wikigene:100233072	MapMan:15.5.2.1	ProteinID:ACF21938	ProteinID:ACF21938.1
UniProt:B3VTV7	ProteinID:CCB55976	ProteinID:CCB55976.1	EMBL:EU816358	EMBL:FN595995	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:MYB60	wikigene:MYB60	InterPro:Myb_dom
RefSeq:NP_001268022.1	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF726	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001790DB9	ArrayExpress:VIT_08s0056g00800	EnsemblPlantsGene:VIT_08s0056g00800	EnsemblPlants:VIT_08s0056g00800.t01
unigene:Vvi.24356	SEG:seg	:	:	:	:

Description

R2R3 MYB60 transcription factor [Source:UniProtKB/TrEMBL;Acc:B3VTV7]

Coordinates

chr8:+:1264742..1266497

Molecular Weight (calculated)

36176.3 Da

IEP (calculated)

6.599

GRAVY (calculated)

-0.785

Length

321 amino acids

Sequence
(BLAST)

001: MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT
101: DNDIKNYWNT HLKKKIKKFQ SALSPHMASD STTSTCTNHQ FVPRSYAGDD HHRRGSSFEV INGHSSAHPS LNSPISTYAS STENISRLLE GWMRSSPKAT
201: KEKLHQNSSL EEGSIDMTGN SMAVAAVTSV QCYRPKLEQG GGELVANDEF ESILEYENLN DDHHQTTDAT IPSDDHDHDH EMKMDHDQKK HNPPLSFLEK
301: WLLDESAAQG EEMMDQLSPI F

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.