CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93535	Canola	nucleus	22.99	96.39
KRH64960	Soybean	nucleus	93.68	90.56
KRG94429	Soybean	nucleus	16.38	66.28
Solyc10g081490.1.1	Tomato	nucleus	47.7	61.48
PGSC0003DMT400072272	Potato	nucleus	47.7	61.03
KRH37834	Soybean	nucleus	20.69	61.02
GSMUA_Achr3P09450_001	Banana	nucleus	49.14	59.17
Bra030743.1-P	Field mustard	nucleus	44.54	58.49
CDY31125	Canola	nucleus	44.54	58.49
CDY32135	Canola	nucleus	44.25	57.68
VIT_08s0056g00800.t01	Wine grape	nucleus	52.3	56.7
GSMUA_Achr9P17050_001	Banana	nucleus	45.11	56.27
Bra018598.1-P	Field mustard	nucleus	45.11	55.67
AT1G08810.1	Thale cress	nucleus	44.25	55.0
GSMUA_Achr10P...	Banana	nucleus	43.97	53.12
GSMUA_Achr5P07720_001	Banana	nucleus	44.54	52.54
GSMUA_Achr10P...	Banana	nucleus	43.1	52.45
KRH66212	Soybean	cytosol	21.55	49.67
KRH63348	Soybean	nucleus	45.4	49.53
KRH56914	Soybean	nucleus	44.83	48.9
KRH54550	Soybean	nucleus	45.98	48.05
KRH03474	Soybean	nucleus	44.25	47.38
KRH40103	Soybean	nucleus	43.39	45.48
KRH01168	Soybean	nucleus	43.1	44.91
KRH18478	Soybean	nucleus	42.53	44.44
KRG93528	Soybean	nucleus	42.24	43.62
KRH66092	Soybean	nucleus	18.68	18.21
KRG99521	Soybean	nucleus	18.39	18.18
KRG99949	Soybean	nucleus	16.95	16.53
KRH49100	Soybean	nucleus	16.67	16.07

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100817854	MapMan:15.5.2.1	UniProt:A0A0R4J616	EMBL:ACUP02012065	EnsemblPlantsGene:GLYMA_19G119300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930
EnsemblPlants:KRG94936	ProteinID:KRG94936	ProteinID:KRG94936.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF726	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000189D949
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:37702094..37704120

Molecular Weight (calculated)

39080.3 Da

IEP (calculated)

6.657

GRAVY (calculated)

-0.878

Length

348 amino acids

Sequence
(BLAST)

001: MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLSRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLKKFQ AALDPHSASD STASGQFLPK SFSDRRSLDI SSSNNNHGSS IRLSHQSQSS STTYASSTEN ISRLLEGWMR SSPKPLKGSS
201: SQDDEDIQLQ GINDDDKNNN NFESTTKLVN LHHLQHKVRN KDEHQEGGGG GVDNMVSHEE FDSILSFENL NNAAWDKSTC DSMPEKSSEA AAEYSVDHHH
301: DIAAHERNNI RQKSENSGAP PLSFLEKWLL DESVGHQVEE MMELSPMF

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.