CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37834	Soybean	nucleus	87.21	63.56
KRH66212	Soybean	cytosol	63.95	36.42
CDY30719	Canola	nucleus	66.28	21.27
CDY00289	Canola	nucleus	67.44	20.94
CDY16773	Canola	nucleus	68.6	20.0
KRH40103	Soybean	nucleus	75.58	19.58
KRH01168	Soybean	nucleus	75.58	19.46
KRH56914	Soybean	nucleus	68.6	18.5
KRH63348	Soybean	nucleus	67.44	18.18
KRH03474	Soybean	nucleus	68.6	18.15
KRG93528	Soybean	nucleus	70.93	18.1
KRH18478	Soybean	nucleus	69.77	18.02
Bra035893.1-P	Field mustard	nucleus	68.6	17.61
CDX87250	Canola	nucleus	68.6	17.61
KRH54550	Soybean	nucleus	67.44	17.42
AT3G47600.1	Thale cress	nucleus	67.44	17.42
CDY69264	Canola	nucleus	66.28	17.17
Bra029258.1-P	Field mustard	nucleus	66.28	16.62
KRG94936	Soybean	nucleus	66.28	16.38
AT5G62470.2	Thale cress	nucleus	66.28	16.19
KRH64960	Soybean	nucleus	66.28	15.83
Bra010085.1-P	Field mustard	nucleus	66.28	12.72
KRH66092	Soybean	nucleus	36.05	8.68
KRG99521	Soybean	nucleus	33.72	8.24
KRG99949	Soybean	nucleus	33.72	8.12
KRH49100	Soybean	nucleus	33.72	8.03

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EMBL:ACUP02011958	EnsemblPlantsGene:GLYMA_19G084000	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7MXA3	EnsemblPlants:KRG94429	ProteinID:KRG94429	ProteinID:KRG94429.1
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF715	InterPro:SANT/Myb
SUPFAM:SSF46689	UniParc:UPI0002948478	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:30259442..30259943

Molecular Weight (calculated)

9994.1 Da

IEP (calculated)

10.461

GRAVY (calculated)

-0.615

Length

86 amino acids

Sequence
(BLAST)

1: MCIKQRESRQ HIILVSYIQE HGPGNWRAVL AKTGFSRCSK SCRLRSTNYL RPGIKQGNFS EQEEKMIIHL QDLLGNRYKS IFQAPT

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.