Factsheet for Bra035893.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16773	Canola	nucleus	88.06	100.0
CDX87250	Canola	nucleus	98.51	98.51
Bra029258.1-P	Field mustard	nucleus	89.25	87.17
AT5G62470.2	Thale cress	nucleus	84.48	80.4
KRG94429	Soybean	nucleus	17.61	68.6
Bra010085.1-P	Field mustard	nucleus	87.46	65.4
Bra033067.1-P	Field mustard	nucleus	52.84	54.29
KRH40103	Soybean	nucleus	53.13	53.61
KRH01168	Soybean	nucleus	53.43	53.59
Bra025361.1-P	Field mustard	nucleus	53.13	53.45
Bra015899.1-P	Field mustard	nucleus	52.24	52.55
KRG93528	Soybean	nucleus	52.24	51.93
Bra003793.1-P	Field mustard	nucleus	52.24	51.78
Bra030743.1-P	Field mustard	nucleus	40.9	51.7
Bra039040.1-P	Field mustard	nucleus	51.94	51.48
KRH18478	Soybean	nucleus	51.04	51.35
Bra008160.1-P	Field mustard	nucleus	51.94	51.33
KRH66212	Soybean	cytosol	22.69	50.33
Bra018598.1-P	Field mustard	nucleus	40.9	48.58
Bra000011.1-P	Field mustard	nucleus	17.61	17.0
Bra005177.1-P	Field mustard	nucleus	17.31	16.07

Protein Annotations

EnsemblPlants:Bra035893.1	EnsemblPlants:Bra035893.1-P	EnsemblPlantsGene:Bra035893	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF902	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002542099	UniProt:M4F493	MapMan:15.5.2.1	:	:

Description

AT5G62470 (E=6e-093) MYB96 | MYB96 (myb domain protein 96); DNA binding / transcription factor

Coordinates

chrA09:-:3031094..3032445

Molecular Weight (calculated)

37417.8 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.646

Length

335 amino acids

Sequence
(BLAST)

001: MGRPPCCEKT GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKIN ESGEEDNDGF TSSHTISQKQ HHSSNKGQWE RRLQTDINMA KQALCEALSL DKKPSSKFSP SSSSLSIIPQ NIPSFSSSSS
201: TTTTITTTTQ CLSGVYASSA ENIARLLQDF MKDTPKSLTL TSSSSPVSET GPLVSAATEE GGEGFEQSFF SFNSMEETHN LTQETSFFHD QESKPVITME
301: QDPGLISQGS LSLFEKWLFD ENMVAMSLEG QEAMC

Best Arabidopsis Sequence Match ( AT5G62470.2 )
(BLAST)

001: MGRPPCCEKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKTIVH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKIN ESGEEDNDGV SSSNTSSQKN HQSTNKGQWE RRLQTDINMA KQALCEALSL DKPSSTLSSS SSLPTPVITQ QNIRNFSSAL
201: LDRCYDPSSS SSSTTTTTTS NTTNPYPSGV YASSAENIAR LLQDFMKDTP KALTLSSSSP VSETGPLTAA VSEEGGEGFE QSFFSFNSMD ETQNLTQETS
301: FFHDQVIKPE ITMDQDHGLI SQGSLSLFEK WLFDEQSHEM VGMALAGQEG MF

Arabidopsis Description

MYB96Transcription factor MYB96 [Source:UniProtKB/Swiss-Prot;Acc:Q24JK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.