CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93528	Soybean	nucleus	90.09	89.02
KRH40103	Soybean	nucleus	72.67	72.89
KRH01168	Soybean	nucleus	71.77	71.56
KRG94429	Soybean	nucleus	18.02	69.77
KRH37834	Soybean	nucleus	23.12	65.25
KRH63348	Soybean	nucleus	51.35	53.6
CDY30719	Canola	nucleus	42.94	53.36
KRH56914	Soybean	nucleus	50.75	52.98
KRH54550	Soybean	nucleus	51.95	51.95
CDY16773	Canola	nucleus	45.95	51.86
KRH03474	Soybean	nucleus	50.45	51.69
Bra035893.1-P	Field mustard	nucleus	51.35	51.04
CDY69264	Canola	nucleus	50.75	50.9
CDX87250	Canola	nucleus	51.05	50.75
CDY00289	Canola	nucleus	42.04	50.54
Bra029258.1-P	Field mustard	nucleus	51.05	49.56
AT3G47600.1	Thale cress	nucleus	49.55	49.55
KRH66212	Soybean	cytosol	22.22	49.01
AT5G62470.2	Thale cress	nucleus	51.05	48.3
KRG94936	Soybean	nucleus	44.44	42.53
KRH64960	Soybean	nucleus	44.14	40.83
Bra010085.1-P	Field mustard	nucleus	50.15	37.28
KRG99521	Soybean	nucleus	20.42	19.32
KRH49100	Soybean	nucleus	20.42	18.84
KRG99949	Soybean	nucleus	20.12	18.77
KRH66092	Soybean	nucleus	20.12	18.77

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:780542	EMBL:ACUP02008076	EnsemblPlantsGene:GLYMA_13G063200	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	UniProt:I1LWK2	InterPro:IPR017930	EnsemblPlants:KRH18478	ProteinID:KRH18478
ProteinID:KRH18478.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF902
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000233BC5D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:16154043..16155833

Molecular Weight (calculated)

36761.0 Da

IEP (calculated)

6.753

GRAVY (calculated)

-0.557

Length

333 amino acids

Sequence
(BLAST)

001: MGRPPCCDKE GVKKGPWTPE EDIILVSYIQ EHGPSNWKAV PANTGLSRCS KSCRLRWTNY LRPGIKRGNF TDQEEKMIIH LQALLGNRWA AIAAYLPQRT
101: DNDIKNYWNT YLKKKLNKLE AGSDQGHNIG VSVSQPMSRG QWERRLQTDI RMAKRALIEA LSSNKASSSS TLLLAESNSN LSSENSIFYN SNTNKPTTQS
201: MCYASSADNI ARLLKGWMKN TPKLASCAAS AVTQNSFNNL AGADTAFSEG ITTTKGSTST STVELSETFD SLFGYESLDY SSNSEFSPSL SPEATPFQDE
301: SKPDITADGI DMPFSLLEKW LLDDAACQEK LGF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.