CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93535	Canola	nucleus	27.44	91.57
CDY30719	Canola	nucleus	84.84	87.69
CDX95030	Canola	nucleus	35.02	85.09
CDY16773	Canola	nucleus	87.0	81.69
CDY69264	Canola	nucleus	91.34	76.2
CDX87250	Canola	nucleus	87.73	72.54
AT5G62470.2	Thale cress	nucleus	90.61	71.31
KRG94429	Soybean	nucleus	20.94	67.44
Bra010085.1-P	Field mustard	nucleus	96.39	59.6
CDY31125	Canola	nucleus	47.29	49.43
KRH66212	Soybean	cytosol	26.71	49.01
CDY32135	Canola	nucleus	46.93	48.69
CDY04044	Canola	nucleus	54.15	47.77
CDY44428	Canola	nucleus	54.15	46.01
CDX86406	Canola	nucleus	55.23	45.95
CDX86405	Canola	nucleus	55.23	45.95
CDX85227	Canola	nucleus	54.87	45.65
CDY00107	Canola	nucleus	55.6	45.56
KRH40103	Soybean	nucleus	54.15	45.18
KRH01168	Soybean	nucleus	53.79	44.61
CDX73103	Canola	nucleus	52.35	43.81
CDX96557	Canola	nucleus	52.35	43.54
CDX85848	Canola	nucleus	50.9	43.52
CDX68173	Canola	nucleus	50.54	43.34
KRG93528	Soybean	nucleus	51.99	42.73
KRH18478	Soybean	nucleus	50.54	42.04
CDX95031	Canola	nucleus, plastid	11.19	20.0
CDY64733	Canola	nucleus	14.44	19.32
CDY07778	Canola	nucleus	19.49	15.56
CDX79747	Canola	nucleus	19.13	15.23
CDX91374	Canola	nucleus	19.13	14.85
CDX74943	Canola	nucleus	19.49	14.75

Protein Annotations

EnsemblPlants:CDY00289	EnsemblPlantsGene:GSBRNA2T00109868001	Gene3D:1.10.10.60	GO:A0A078EHL6	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF902	PFAM:PF00249	PFscan:PS51294	ProteinID:CDY00289	ProteinID:CDY00289.1
SEG:seg	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EEA4D6	MapMan:15.5.2.1	:

Description

BnaA06g21900D

Coordinates

chrLK031917:-:793000..794584

Molecular Weight (calculated)

30979.3 Da

IEP (calculated)

6.043

GRAVY (calculated)

-0.594

Length

277 amino acids

Sequence
(BLAST)

001: MVRPPCCEKN GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKIN ESVIIPQNIP SFSSALLDRC YDPSSSSSST TTTTTTTSNN TNPYPSGVYA SSAENIARLL QDFMKDTPKT LTLTSSSPVS
201: ETGPLASATS EEGGEGFEQS FFSFNSMEET QNLTQETSFF HDQENSGLIS QGSLSLLEKW LFDENMVGMS LGQEAMI

Best Arabidopsis Sequence Match ( AT5G62470.2 )
(BLAST)

001: MGRPPCCEKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKTIVH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKIN ESGEEDNDGV SSSNTSSQKN HQSTNKGQWE RRLQTDINMA KQALCEALSL DKPSSTLSSS SSLPTPVITQ QNIRNFSSAL
201: LDRCYDPSSS SSSTTTTTTS NTTNPYPSGV YASSAENIAR LLQDFMKDTP KALTLSSSSP VSETGPLTAA VSEEGGEGFE QSFFSFNSMD ETQNLTQETS
301: FFHDQVIKPE ITMDQDHGLI SQGSLSLFEK WLFDEQSHEM VGMALAGQEG MF

Arabidopsis Description

MYB96Transcription factor MYB96 [Source:UniProtKB/Swiss-Prot;Acc:Q24JK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.