CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40103	Soybean	nucleus	94.61	95.18
KRG94429	Soybean	nucleus	19.46	75.58
KRH18478	Soybean	nucleus	71.56	71.77
KRG93528	Soybean	nucleus	70.36	69.73
KRH37834	Soybean	nucleus	24.55	69.49
CDY30719	Canola	nucleus	44.31	55.22
KRH56914	Soybean	nucleus	52.4	54.86
KRH63348	Soybean	nucleus	52.1	54.55
CDY16773	Canola	nucleus	47.9	54.24
CDY00289	Canola	nucleus	44.61	53.79
KRH54550	Soybean	nucleus	53.29	53.45
Bra035893.1-P	Field mustard	nucleus	53.59	53.43
CDY69264	Canola	nucleus	52.69	53.01
KRH03474	Soybean	nucleus	51.5	52.92
CDX87250	Canola	nucleus	52.99	52.84
AT3G47600.1	Thale cress	nucleus	51.8	51.95
Bra029258.1-P	Field mustard	nucleus	53.29	51.9
KRH66212	Soybean	cytosol	22.75	50.33
AT5G62470.2	Thale cress	nucleus	52.4	49.72
KRG94936	Soybean	nucleus	44.91	43.1
KRH64960	Soybean	nucleus	44.91	41.67
Bra010085.1-P	Field mustard	nucleus	52.4	39.06
KRH49100	Soybean	nucleus	21.26	19.67
KRG99949	Soybean	nucleus	20.96	19.61
KRG99521	Soybean	nucleus	20.06	19.03
KRH66092	Soybean	nucleus	20.06	18.77

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:778080	EMBL:ACUP02011503	EMBL:BT093784	UniProt:C6T8I3
EnsemblPlantsGene:GLYMA_18G259100	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KRH01168
ProteinID:KRH01168	ProteinID:KRH01168.1	EMBL:KT031204	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF902	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00005B0D6A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:54462068..54464135

Molecular Weight (calculated)

36859.1 Da

IEP (calculated)

7.636

GRAVY (calculated)

-0.676

Length

334 amino acids

Sequence
(BLAST)

001: MGRPPCCDKE GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PAKTGLSRCS KSCRLRWTNY LRPGIKRGNF TEQEEKMIIH LQDLLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLRKKLKKMQ VGCEGGSFGE GFSASRQIPR GQWERRLQTD IQMAKRALSE ALSPEKPSCN LSASNSNPSD SSSSFSSTKP TTTQTVCYAS
201: SADNIARMLK GWMKNPPKSS RTNSSSVTQN SFNNFAAAGA DTASSIGAKG PPSSAELSEN NFESLFDFDQ SLESSNSDEF SRSLSPEATV LQDESKPDVI
301: GAEIMPFSLL EKWLLDEAGC QEKLVGCGDD AKFF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.