CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56914	Soybean	nucleus	91.69	93.42
KRG94429	Soybean	nucleus	18.15	68.6
KRH63348	Soybean	nucleus	65.54	66.77
KRH54550	Soybean	nucleus	67.38	65.77
KRH37834	Soybean	nucleus	22.77	62.71
Solyc03g116100.2.1	Tomato	nucleus	60.62	59.16
PGSC0003DMT400050287	Potato	nucleus	60.62	58.46
AT1G74650.1	Thale cress	nucleus	53.85	53.03
CDX73103	Canola	nucleus	53.85	52.87
Solyc06g069850.2.1	Tomato	nucleus	60.62	52.25
CDX85848	Canola	nucleus	52.0	52.16
KRH40103	Soybean	nucleus	52.92	51.81
PGSC0003DMT400083076	Potato	nucleus	59.69	51.73
CDX68173	Canola	nucleus	51.38	51.7
CDX96557	Canola	nucleus	52.92	51.65
Bra015899.1-P	Field mustard	nucleus	52.92	51.65
KRH01168	Soybean	nucleus	52.92	51.5
Bra003793.1-P	Field mustard	nucleus	52.92	50.89
KRH18478	Soybean	nucleus	51.69	50.45
KRH66212	Soybean	cytosol	23.08	49.67
KRG93528	Soybean	nucleus	50.46	48.66
Bra008160.1-P	Field mustard	nucleus	50.15	48.08
KRG94936	Soybean	nucleus	47.38	44.25
KRH64960	Soybean	nucleus	47.38	42.78
KRH66092	Soybean	nucleus	20.62	18.77
KRG99521	Soybean	nucleus	20.31	18.75
KRG99949	Soybean	nucleus	19.69	17.93
KRH49100	Soybean	nucleus	19.38	17.45

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100812460	MapMan:15.5.2.1	EMBL:ACUP02010348	EnsemblPlantsGene:GLYMA_17G099800	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	UniProt:I1MTT4	InterPro:IPR017930	EnsemblPlants:KRH03474	ProteinID:KRH03474
ProteinID:KRH03474.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF906
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000295C715	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:7861702..7863751

Molecular Weight (calculated)

36216.9 Da

IEP (calculated)

7.192

GRAVY (calculated)

-0.826

Length

325 amino acids

Sequence
(BLAST)

001: MHNMGRPPCC DKIGIKKGPW TPEEDISLVS YIQEHGPGNW RAVPTNTGLM RCSKSCRLRW TNYLRPGIKR GNFTEHEEKM IIHLQALLGN RWAAIASYLP
101: QRTDNDIKNY WNTHLKKKLK QSDQSGSDEG VDHEGHSSSS SSNSHPKGQW ERRLQTDIQM AKKALCDALS LHKPATATTT TLVVPDDATK PSSSSHHQPY
201: NHASSSYASS YENISRLMEN WMKPPNSTNN SPGYYSSFSN MVNNNTSTTG SSSSEGAHST TTTTTQDQGF DCFLTLNSSK QYYGSPSQTQ VPLTLLENWL
301: FDDGAAQCHE DLMNMSLEES TAGLF

Best Arabidopsis Sequence Match ( AT1G74650.1 )
(BLAST)

001: MGRPPCCEKI EVKKGPWTPE EDIILVSYIQ QHGPGNWRSV PANTGLLRCS KSCRLRWTNY LRPGIKRGNF TQPEEKMIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLVMMK FQNGIINENK TNLATDISSC NNNNNGCNHN KRTTNKGQWE KKLQTDINMA KQALFQALSL DQPSSLIPPD PDSPKPHHHS
201: TTTYASSTDN ISKLLQNWTS SSSSKPNTSS VSNNRSSSPG EGGLFDHHSL FSSNSESGSV DEKLNLMSET SMFKGESKPD IDMEATPTTT TTDDQGSLSL
301: IEKWLFDDQG LVQCDDSQED LIDVSLEELK

Arabidopsis Description

ATY13At1g74650 [Source:UniProtKB/TrEMBL;Acc:Q9CA52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.