Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g116100.2.1 | Tomato | nucleus | 93.18 | 94.29 |
| KRH56914 | Soybean | nucleus | 58.16 | 61.44 |
| KRH63348 | Soybean | nucleus | 57.86 | 61.13 |
| KRH54550 | Soybean | nucleus | 60.24 | 60.96 |
| KRH03474 | Soybean | nucleus | 58.46 | 60.62 |
| PGSC0003DMT400083076 | Potato | nucleus | 65.58 | 58.93 |
| PGSC0003DMT400072272 | Potato | nucleus | 42.73 | 52.94 |
| PGSC0003DMT400017844 | Potato | nucleus | 48.96 | 50.0 |
| PGSC0003DMT400003347 | Potato | nucleus | 45.99 | 48.74 |
| PGSC0003DMT400022771 | Potato | nucleus | 22.55 | 21.05 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102601468 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1BQ30 | InterPro:Myb_dom | PFAM:PF00249 |
| EnsemblPlantsGene:PGSC0003DMG400019535 | PGSC:PGSC0003DMG400019535 | EnsemblPlants:PGSC0003DMT400050287 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF922 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0002966CF0 | RefSeq:XP_006364601.1 | SEG:seg |
Description
MYB domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400019535]
Coordinates
chr3:-:55884819..55886615
Molecular Weight (calculated)
37207.2 Da
IEP (calculated)
5.747
GRAVY (calculated)
-0.688
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ QHGPGNWRAV PSNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLRKKLKKLQ GNDENSTQEG TTSSSSQSNF SKGQWERRLQ TDIHMARKAL CEALSLDKSD SSANPISPIP AQQPVTGSSS YASSAENISR
201: LLQNWMKDSP KSSELSRSTS ETTQSSLNNP SIGSGSGSGS SPSEGTISAA TPEGFDSFFS EGNAFTPEIF QVESKPNFPN VNSENGFLFQ AESKPSLEES
301: QVPLTLLEKW LFDDAINAPA QEEEFMGMGL GESADFF
101: DNDIKNYWNT HLRKKLKKLQ GNDENSTQEG TTSSSSQSNF SKGQWERRLQ TDIHMARKAL CEALSLDKSD SSANPISPIP AQQPVTGSSS YASSAENISR
201: LLQNWMKDSP KSSELSRSTS ETTQSSLNNP SIGSGSGSGS SPSEGTISAA TPEGFDSFFS EGNAFTPEIF QVESKPNFPN VNSENGFLFQ AESKPSLEES
301: QVPLTLLEKW LFDDAINAPA QEEEFMGMGL GESADFF
001: MGRPPCCEKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKTIVH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKIN ESGEEDNDGV SSSNTSSQKN HQSTNKGQWE RRLQTDINMA KQALCEALSL DKPSSTLSSS SSLPTPVITQ QNIRNFSSAL
201: LDRCYDPSSS SSSTTTTTTS NTTNPYPSGV YASSAENIAR LLQDFMKDTP KALTLSSSSP VSETGPLTAA VSEEGGEGFE QSFFSFNSMD ETQNLTQETS
301: FFHDQVIKPE ITMDQDHGLI SQGSLSLFEK WLFDEQSHEM VGMALAGQEG MF
101: DNDIKNYWNT HLKKKLKKIN ESGEEDNDGV SSSNTSSQKN HQSTNKGQWE RRLQTDINMA KQALCEALSL DKPSSTLSSS SSLPTPVITQ QNIRNFSSAL
201: LDRCYDPSSS SSSTTTTTTS NTTNPYPSGV YASSAENIAR LLQDFMKDTP KALTLSSSSP VSETGPLTAA VSEEGGEGFE QSFFSFNSMD ETQNLTQETS
301: FFHDQVIKPE ITMDQDHGLI SQGSLSLFEK WLFDEQSHEM VGMALAGQEG MF
Arabidopsis Description
MYB96Transcription factor MYB96 [Source:UniProtKB/Swiss-Prot;Acc:Q24JK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.