Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g067340.2.1 | Tomato | nucleus | 92.73 | 91.34 |
| PGSC0003DMT400003347 | Potato | nucleus | 53.94 | 55.97 |
| PGSC0003DMT400072272 | Potato | nucleus | 40.91 | 49.63 |
| PGSC0003DMT400050287 | Potato | nucleus | 50.0 | 48.96 |
| PGSC0003DMT400083076 | Potato | nucleus | 52.42 | 46.13 |
| PGSC0003DMT400022771 | Potato | nucleus | 20.0 | 18.28 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102603983 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1A9K4 | InterPro:Myb_dom | PFAM:PF00249 |
| EnsemblPlantsGene:PGSC0003DMG400006930 | PGSC:PGSC0003DMG400006930 | EnsemblPlants:PGSC0003DMT400017844 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF902 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000295CC63 | RefSeq:XP_015168798.1 | SEG:seg |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400006930]
Coordinates
chr2:-:25838187..25840887
Molecular Weight (calculated)
36730.8 Da
IEP (calculated)
5.258
GRAVY (calculated)
-0.660
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVPCCDKV GVKKGPWTPE EDIILVSYVQ QHGPGNWRAL PTKTGLHRCS KSCRLRWTNY LRPGIKRGNF TDQEEKMIIQ LQALLGNKWA AIASYLPERT
101: DNDIKNYWNT YLKKKMKKLD QLDQCHGSND LFSLENGLTH LSSSNSSTSR GQWERTLQAD INMAKKALHN ALSLENPQVS STTTTTYASS TENIARLLQG
201: WMGSSTSSTN NSESSKTSSN NIATTDSSSC DGNPNAESKG GMGLMEAFES LFGLESFESS SSDELSQTAT PEAETEAIKI EIKKEENEHD VEVPLSVILE
301: NWLLDENTLN IQPKNDLTTL ISFDQTPHLF
101: DNDIKNYWNT YLKKKMKKLD QLDQCHGSND LFSLENGLTH LSSSNSSTSR GQWERTLQAD INMAKKALHN ALSLENPQVS STTTTTYASS TENIARLLQG
201: WMGSSTSSTN NSESSKTSSN NIATTDSSSC DGNPNAESKG GMGLMEAFES LFGLESFESS SSDELSQTAT PEAETEAIKI EIKKEENEHD VEVPLSVILE
301: NWLLDENTLN IQPKNDLTTL ISFDQTPHLF
001: MGRPPCCEKI EVKKGPWTPE EDIILVSYIQ QHGPGNWRSV PANTGLLRCS KSCRLRWTNY LRPGIKRGNF TQPEEKMIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLVMMK FQNGIINENK TNLATDISSC NNNNNGCNHN KRTTNKGQWE KKLQTDINMA KQALFQALSL DQPSSLIPPD PDSPKPHHHS
201: TTTYASSTDN ISKLLQNWTS SSSSKPNTSS VSNNRSSSPG EGGLFDHHSL FSSNSESGSV DEKLNLMSET SMFKGESKPD IDMEATPTTT TTDDQGSLSL
301: IEKWLFDDQG LVQCDDSQED LIDVSLEELK
101: DNDIKNYWNT HLKKKLVMMK FQNGIINENK TNLATDISSC NNNNNGCNHN KRTTNKGQWE KKLQTDINMA KQALFQALSL DQPSSLIPPD PDSPKPHHHS
201: TTTYASSTDN ISKLLQNWTS SSSSKPNTSS VSNNRSSSPG EGGLFDHHSL FSSNSESGSV DEKLNLMSET SMFKGESKPD IDMEATPTTT TTDDQGSLSL
301: IEKWLFDDQG LVQCDDSQED LIDVSLEELK
Arabidopsis Description
ATY13At1g74650 [Source:UniProtKB/TrEMBL;Acc:Q9CA52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.