Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g087960.2.1 | Tomato | nucleus | 88.05 | 95.89 |
| PGSC0003DMT400017844 | Potato | nucleus | 55.97 | 53.94 |
| PGSC0003DMT400072272 | Potato | nucleus | 40.88 | 47.79 |
| PGSC0003DMT400050287 | Potato | nucleus | 48.74 | 45.99 |
| PGSC0003DMT400083076 | Potato | nucleus | 51.57 | 43.73 |
| PGSC0003DMT400022771 | Potato | nucleus | 19.5 | 17.17 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400003347 | EnsemblPlantsGene:PGSC0003DMG400001325 | EntrezGene:102584111 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF715 | PFAM:PF00249 | PFscan:PS51294 | PGSC:PGSC0003DMG400001325 | SEG:seg |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000296C53C | UniProt:M0ZLH6 | MapMan:15.5.2.1 | : |
Description
R2R3 Myb30 transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400001325]
Coordinates
chr2:-:46228636..46229957
Molecular Weight (calculated)
36183.3 Da
IEP (calculated)
6.996
GRAVY (calculated)
-0.736
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPPCCDKT GVKKGPWTPE EDIMLVSFVQ EHGPGNWRTV PTHTGSFLFL LDLYSQSEFR ARLIVWLRRC SKSCRLRWTN YLRPGIKRGS FTDQEEKMII
101: QLQALLGNKW AAIASYLPER TDNDIKNYWN THLKKKLKKL ETSGLYSNDG HCLSTYNSTS RGQWERTLQA DINTAKQALQ NALSLDKSSP IPDYTITDIG
201: CYPYIKQEAK MSTTTYASNA ENIAKLLKQW TKSESTNNSE QSKASSSTQY SCNTNNNNAM TEYSSSFEPS NSDQFSQATT PEAAGKFHGE SKREIDDEIQ
301: LSVMLESWLF DENDDLLI
101: QLQALLGNKW AAIASYLPER TDNDIKNYWN THLKKKLKKL ETSGLYSNDG HCLSTYNSTS RGQWERTLQA DINTAKQALQ NALSLDKSSP IPDYTITDIG
201: CYPYIKQEAK MSTTTYASNA ENIAKLLKQW TKSESTNNSE QSKASSSTQY SCNTNNNNAM TEYSSSFEPS NSDQFSQATT PEAAGKFHGE SKREIDDEIQ
301: LSVMLESWLF DENDDLLI
001: MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMILH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKMN DSCDSTINNG LDNKDFSISN KNTTSHQSSN SSKGQWERRL QTDINMAKQA LCDALSIDKP QNPTNFSIPD LGYGPSSSSS
201: STTTTTTTTR NTNPYPSGVY ASSAENIARL LQNFMKDTPK TSVPLPVAAT EMAITTAASS PSTTEGDGEG IDHSLFSFNS IDEAEEKPKL IDHDINGLIT
301: QGSLSLFEKW LFDEQSHDMI INNMSLEGQE VLF
101: DNDIKNYWNT HLKKKLKKMN DSCDSTINNG LDNKDFSISN KNTTSHQSSN SSKGQWERRL QTDINMAKQA LCDALSIDKP QNPTNFSIPD LGYGPSSSSS
201: STTTTTTTTR NTNPYPSGVY ASSAENIARL LQNFMKDTPK TSVPLPVAAT EMAITTAASS PSTTEGDGEG IDHSLFSFNS IDEAEEKPKL IDHDINGLIT
301: QGSLSLFEKW LFDEQSHDMI INNMSLEGQE VLF
Arabidopsis Description
MYB94Transcription factor MYB94 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN78]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.