CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88909
KRH01276
KRH28509
KRH39574
KRH45025
KRH53127
KRH57745
KRH62409
KRH74370
KRH74373
KRH76950

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37630.1	KRH39574	AT1G32230.1	19548978
AT2G37630.1	KRH74370	AT1G32230.1	19548978
AT2G37630.1	KRH74373	AT1G32230.1	19548978
AT2G37630.1	KRG88909	AT1G65620.1	19228338
AT2G37630.1	KRH01276	AT3G29390.1	16243907
AT2G37630.1	KRH45025	AT3G29390.1	16243907
AT2G37630.1	KRH28509	AT5G66870.1	16243907
AT2G37630.1	KRH53127	AT5G66870.1	16243907
AT2G37630.1	KRH57745	AT5G66870.1	16243907
AT2G37630.1	KRH62409	AT5G66870.1	16243907
AT2G37630.1	KRH76950	AT5G66870.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66092	Soybean	nucleus	90.91	89.64
KRG99949	Soybean	nucleus	77.27	76.19
KRH49100	Soybean	nucleus	77.27	75.35
VIT_08s0007g00410.t01	Wine grape	nucleus	73.58	72.35
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	32.95	69.88
GSMUA_Achr7P10550_001	Banana	nucleus	58.81	67.65
GSMUA_Achr9P28330_001	Banana	nucleus	61.08	66.77
Solyc09g010840.1.1	Tomato	nucleus	67.9	66.39
PGSC0003DMT400022771	Potato	nucleus	67.33	65.65
CDY07778	Canola	nucleus	64.2	65.13
Bra000011.1-P	Field mustard	nucleus	64.2	65.13
CDX79747	Canola	nucleus	63.35	64.08
CDX91374	Canola	nucleus	63.64	62.75
AT2G37630.1	Thale cress	nucleus	64.77	62.13
Bra005177.1-P	Field mustard	nucleus	63.35	61.77
CDX74943	Canola	nucleus	63.64	61.2
TraesCS5A01G079100.1	Wheat	nucleus	59.09	60.64
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	59.66	58.17
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	59.66	57.85
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	58.81	57.18
GSMUA_Achr9P03320_001	Banana	nucleus	44.32	56.52
Os12t0572000-01	Rice	nucleus	54.55	56.14
Zm00001d030737_P001	Maize	nucleus	56.53	53.78
EES17234	Sorghum	nucleus	56.25	51.97
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	32.1	38.31
GSMUA_Achr5P29070_001	Banana	nucleus	61.08	36.56
KRG94429	Soybean	nucleus	8.24	33.72
KRH37834	Soybean	nucleus	9.94	29.66
HORVU6Hr1G071420.2	Barley	plastid	14.77	28.26
KRH66212	Soybean	cytosol	9.94	23.18
KRH63348	Soybean	nucleus	19.32	21.32
KRH54550	Soybean	nucleus	19.89	21.02
KRH18478	Soybean	nucleus	19.32	20.42
KRH56914	Soybean	nucleus	18.47	20.38
KRH03474	Soybean	nucleus	18.75	20.31
KRH40103	Soybean	nucleus	19.03	20.18
KRH01168	Soybean	nucleus	19.03	20.06
KRG93528	Soybean	nucleus	19.03	19.88
KRG94936	Soybean	nucleus	18.18	18.39
KRH64960	Soybean	nucleus	17.9	17.5

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100809813	MapMan:15.5.2.1	EMBL:ACUP02011096	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G151400
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	UniProt:I1N1S3	InterPro:IPR017930	EMBL:KC737843
ProteinID:KRG99520.1	EnsemblPlants:KRG99521	ProteinID:KRG99521	ProteinID:KRG99521.1	InterPro:Myb_dom	PFAM:PF13921
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF658	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI000233EB34	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:28370342..28373637

Molecular Weight (calculated)

40288.2 Da

IEP (calculated)

10.012

GRAVY (calculated)

-0.758

Length

352 amino acids

Sequence
(BLAST)

001: MKERQRWRAE EDALLCSYVK QYGPREWNLV SQRMNTPLNR DAKSCLERWK NYLKPDIKKG SLTEEEQRLV IRLQAKYGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE KKDVNRISDP INNSKYEHIL ESFAEKLVKE RPSPSFLMAA SNGAFLHTDT PAPASSLLPS WLSNSSSPAA DGPSSLSVTL SLSSSMVIAP
201: PFSWLPPKRG PDNAPFVLGN AAALQGVIPT LSDNMLMSQM VEHRKELEEG HRALGTHKKE AAWRLSRVEL QLESEKTNRR REKIEEFEAK IKALQEEELA
301: ALGRIEAEYR EQLDALRRDA ENKEQKLAEQ WAAKHLRLTR LLEQLGCRAG LP

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.