Factsheet for GSMUA_Achr9P28330_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P17160_001
GSMUA_Achr2P18060_001
GSMUA_Achr4P19000_001
GSMUA_Achr5P14120_001
GSMUA_Achr6P04670_001
GSMUA_Achr8P14660_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37630.1	GSMUA_Achr11P...	AT1G32230.1	19548978
AT2G37630.1	GSMUA_Achr2P18060_001	AT1G32230.1	19548978
AT2G37630.1	GSMUA_Achr4P19000_001	AT1G32230.1	19548978
AT2G37630.1	GSMUA_Achr5P14120_001	AT1G32230.1	19548978
AT2G37630.1	GSMUA_Achr8P14660_001	AT1G32230.1	19548978
AT2G37630.1	GSMUA_AchrUn_...	AT3G29390.1	16243907
AT2G37630.1	GSMUA_Achr2P17160_001	AT5G66870.1	16243907
AT2G37630.1	GSMUA_Achr6P04670_001	AT5G66870.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P10550_001	Banana	nucleus	72.98	76.8
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	35.09	68.07
VIT_08s0007g00410.t01	Wine grape	nucleus	70.5	63.41
GSMUA_Achr9P03320_001	Banana	nucleus	53.73	62.68
KRG99949	Soybean	nucleus	68.94	62.18
KRH49100	Soybean	nucleus	68.63	61.22
Solyc09g010840.1.1	Tomato	nucleus	68.32	61.11
KRG99521	Soybean	nucleus	66.77	61.08
PGSC0003DMT400022771	Potato	nucleus	68.32	60.94
TraesCS5A01G079100.1	Wheat	nucleus	64.6	60.64
KRH66092	Soybean	nucleus	67.08	60.5
Os12t0572000-01	Rice	nucleus	63.35	59.65
CDY07778	Canola	nucleus	63.98	59.37
Bra000011.1-P	Field mustard	nucleus	63.98	59.37
CDX79747	Canola	nucleus	63.04	58.33
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	65.22	58.01
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	64.91	57.89
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	64.91	57.58
CDX91374	Canola	nucleus	63.66	57.42
Bra005177.1-P	Field mustard	nucleus	63.35	56.51
AT2G37630.1	Thale cress	nucleus	63.98	56.13
CDX74943	Canola	nucleus	63.66	56.01
Zm00001d030737_P001	Maize	nucleus	63.66	55.41
EES17234	Sorghum	nucleus	63.35	53.54
GSMUA_Achr9P19380_001	Banana	nucleus	46.89	49.19
GSMUA_Achr5P29070_001	Banana	nucleus	70.5	38.61
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	33.23	36.27
GSMUA_Achr8P16920_001	Banana	nucleus	12.11	34.51
HORVU6Hr1G071420.2	Barley	plastid	15.84	27.72
GSMUA_Achr11P...	Banana	nucleus	18.63	23.9
GSMUA_Achr2P22010_001	Banana	nucleus	18.32	23.32
GSMUA_Achr7P21010_001	Banana	nucleus	19.25	23.05
GSMUA_Achr3P09450_001	Banana	nucleus	20.5	22.84
GSMUA_Achr6P02690_001	Banana	nucleus	17.7	22.8
GSMUA_Achr4P00480_001	Banana	nucleus	18.63	22.64
GSMUA_Achr5P07720_001	Banana	nucleus	20.5	22.37
GSMUA_Achr6P10700_001	Banana	nucleus	17.7	22.27
GSMUA_Achr7P18080_001	Banana	nucleus	18.32	21.85
GSMUA_Achr8P01400_001	Banana	nucleus	17.7	21.67
GSMUA_Achr10P...	Banana	nucleus	19.25	21.53
GSMUA_Achr10P...	Banana	nucleus	18.63	20.98
GSMUA_Achr9P17050_001	Banana	nucleus	18.01	20.79
GSMUA_AchrUn_...	Banana	nucleus	18.32	20.49
GSMUA_Achr10P...	Banana	nucleus	18.32	18.73
GSMUA_Achr7P21670_001	Banana	nucleus	16.46	18.34

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009987	GO:GO:0010338	EnsemblPlantsGene:GSMUA_Achr9G28330_001	EnsemblPlants:GSMUA_Achr9P28330_001	EnsemblPlants:GSMUA_Achr9T28330_001	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M0U490	InterPro:Myb_dom	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF457	InterPro:RS2/AS1	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00029653E2
SEG:seg	:	:	:	:	:

Description

Transcription factor AS1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G28330_001]

Coordinates

chr9:+:32378337..32379368

Molecular Weight (calculated)

37525.8 Da

IEP (calculated)

9.994

GRAVY (calculated)

-0.949

Length

322 amino acids

Sequence
(BLAST)

001: MKERQRWRSE EDAILCAYVT QYGPREWHLV SQRMNAPLHR DAKSCLERWK NYLKPGIKKG SLTEEEQRVV IGLQAKYGNK WKRIAAEVPG RTAKRLGKWW
101: EVFKEKQQRR QRESSSRSAV CSIEPSKYDQ ILENFAEKLV KDHHHISPLL MATPLLPPWL SNNNGAHRPA SPSRAADNSL GSSRLQHGMA PGFTAVDGRM
201: VSDLVECCKE IEEGHRAWMS HKREAAWRLQ RVELQLDAEK AHKRREKMEE TEAKIRALRE EQQAALDRIE AEYREQILGL RRDAEAKEQK LAEQWASKHM
301: RLSKFLEQCG CRQWPSAEMN GR

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.