Factsheet for Bra000011.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012112.1-P
Bra023252.1-P
Bra033103.1-P
Bra035511.1-P
Bra036212.1-P
Bra037142.1-P
Bra039733.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37630.1	Bra023252.1-P	AT1G32230.1	19548978
AT2G37630.1	Bra035511.1-P	AT1G32230.1	19548978
AT2G37630.1	Bra039733.1-P	AT1G65620.1	19228338
AT2G37630.1	Bra033103.1-P	AT3G29390.1	16243907
AT2G37630.1	Bra036212.1-P	AT3G29390.1	16243907
AT2G37630.1	Bra012112.1-P	AT5G66870.1	16243907
AT2G37630.1	Bra037142.1-P	AT5G66870.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07778	Canola	nucleus	100.0	100.0
CDX79747	Canola	nucleus	97.12	96.84
Bra005177.1-P	Field mustard	nucleus	91.64	88.09
AT2G37630.1	Thale cress	nucleus	91.35	86.38
VIT_08s0007g00410.t01	Wine grape	nucleus	73.2	70.95
Solyc09g010840.1.1	Tomato	nucleus	70.61	68.06
GSMUA_Achr7P10550_001	Banana	nucleus	59.37	67.32
PGSC0003DMT400022771	Potato	nucleus	70.03	67.31
KRG99949	Soybean	nucleus	69.16	67.23
KRH49100	Soybean	nucleus	68.88	66.2
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	31.41	65.66
KRH66092	Soybean	nucleus	66.28	64.43
KRG99521	Soybean	nucleus	65.13	64.2
GSMUA_Achr9P28330_001	Banana	nucleus	59.37	63.98
TraesCS5A01G079100.1	Wheat	nucleus	59.08	59.77
GSMUA_Achr9P03320_001	Banana	nucleus	46.97	59.06
Os12t0572000-01	Rice	nucleus	57.06	57.89
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	59.65	57.34
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	59.94	57.3
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	59.65	57.18
Zm00001d030737_P001	Maize	nucleus	57.06	53.51
EES17234	Sorghum	nucleus	57.35	52.23
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	33.72	39.66
GSMUA_Achr5P29070_001	Banana	nucleus	62.25	36.73
HORVU6Hr1G071420.2	Barley	plastid	16.43	30.98
Bra030743.1-P	Field mustard	nucleus	15.56	20.38
Bra025361.1-P	Field mustard	nucleus	18.16	18.92
Bra033067.1-P	Field mustard	nucleus	17.58	18.71
Bra039040.1-P	Field mustard	nucleus	18.16	18.64
Bra018598.1-P	Field mustard	nucleus	14.41	17.73
Bra015899.1-P	Field mustard	nucleus	17.0	17.72
Bra035893.1-P	Field mustard	nucleus	17.0	17.61
Bra029258.1-P	Field mustard	nucleus	17.29	17.49
Bra003793.1-P	Field mustard	nucleus	17.0	17.46
Bra008160.1-P	Field mustard	nucleus	15.85	16.22
Bra010085.1-P	Field mustard	nucleus	17.0	13.17

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra000011	EnsemblPlants:Bra000011.1	EnsemblPlants:Bra000011.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0010338	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M4C733	InterPro:Myb_dom	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF457	InterPro:RS2/AS1	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002540008
SEG:seg	:	:	:	:	:

Description

AT2G37630 (E=8e-081) ATPHAN, AS1, ATMYB91, MYB91 | AS1 (ASYMMETRIC LEAVES 1); DNA binding / protein homodimerization/ transcription factor

Coordinates

chrA03:-:8822732..8823775

Molecular Weight (calculated)

40407.4 Da

IEP (calculated)

9.903

GRAVY (calculated)

-0.993

Length

347 amino acids

Sequence
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SDRMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSVSVPMASS NGPPSNHVIP PWLATPNNGN SVSVRPPSVT LTLSPSSVAA ASPQPPIPWL
201: QQPERGETHV LGSMIPSCSG GNSESVFMSE LMECCRELEE GHRAWAEHKK EAAWRLRRLE LQLESEKTSR QREKMEEIEA KMKALREEQK MAMEKIEGEY
301: REQLVGLRRD AEAKEQKLAD QWSSKHIRLT KFLEQHMGCR QRLLDRP

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.