Factsheet for Bra033067.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021379.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28910.1	Bra021379.1-P	AT3G03000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44428	Canola	nucleus	99.69	99.69
AT3G28910.1	Thale cress	nucleus	88.65	89.47
Bra025361.1-P	Field mustard	nucleus	89.88	87.99
Bra039040.1-P	Field mustard	nucleus	86.81	83.73
VIT_14s0108g00830.t01	Wine grape	nucleus	56.44	56.27
VIT_17s0000g06190.t01	Wine grape	nucleus	51.53	54.72
Bra035893.1-P	Field mustard	nucleus	54.29	52.84
Bra029258.1-P	Field mustard	nucleus	54.6	51.9
Bra030743.1-P	Field mustard	nucleus	41.72	51.32
Bra018598.1-P	Field mustard	nucleus	41.72	48.23
Bra015899.1-P	Field mustard	nucleus	48.16	47.15
Bra003793.1-P	Field mustard	nucleus	46.93	45.27
Bra008160.1-P	Field mustard	nucleus	45.71	43.95
Bra010085.1-P	Field mustard	nucleus	54.29	39.51
Bra000011.1-P	Field mustard	nucleus	18.71	17.58
Bra005177.1-P	Field mustard	nucleus	18.71	16.9

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra033067	EnsemblPlants:Bra033067.1	EnsemblPlants:Bra033067.1-P	GO:GO:0001666
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006629	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008219	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009617	GO:GO:0009626
GO:GO:0009628	GO:GO:0009719	GO:GO:0009723	GO:GO:0009733	GO:GO:0009739	GO:GO:0009751
GO:GO:0009753	GO:GO:0009987	GO:GO:0042761	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4EW83
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF906	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000254701F	SEG:seg	:	:

Description

AT3G28910 (E=2e-142) ATMYB30, MYB30 | MYB30 (MYB DOMAIN PROTEIN 30); DNA binding / transcription factor

Coordinates

chrA02:-:21564452..21565841

Molecular Weight (calculated)

36480.3 Da

IEP (calculated)

8.703

GRAVY (calculated)

-0.809

Length

326 amino acids

Sequence
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKAN QVSHQEHDQS RDRSSLSSSP SSSSANSNSN IARGQWERRL QTDIHLAKKA LSEALSPAVA PINTATTSSS TESRRSTSSA
201: SGFLRTQETS TTYASNTENI AKLLKGWVKK SPTQNSADQM VSPDSETKEV IKSNVEKDCA WAFQSFSGFD HLKDRDSAGV SPDQETKPDI TGYSNQSQWS
301: LFEKWLFEDS GGQVGDILLD ENPNFF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.