CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY58544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28910.1	CDY58544	AT3G03000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033067.1-P	Field mustard	nucleus	99.69	99.69
CDY04044	Canola	nucleus	93.25	96.82
AT3G28910.1	Thale cress	nucleus	88.96	89.78
CDX93535	Canola	nucleus	22.7	89.16
CDX86405	Canola	nucleus	90.18	88.29
CDX86406	Canola	nucleus	89.88	87.99
CDX85227	Canola	nucleus	89.57	87.69
CDY00107	Canola	nucleus	88.34	85.21
CDX95030	Canola	nucleus	29.45	84.21
VIT_14s0108g00830.t01	Wine grape	nucleus	56.44	56.27
VIT_17s0000g06190.t01	Wine grape	nucleus	51.53	54.72
CDY30719	Canola	nucleus	44.79	54.48
CDY00289	Canola	nucleus	46.01	54.15
CDY16773	Canola	nucleus	48.77	53.9
CDX87250	Canola	nucleus	53.99	52.54
CDY69264	Canola	nucleus	53.37	52.41
CDY31125	Canola	nucleus	41.72	51.32
CDY32135	Canola	nucleus	41.72	50.94
CDX73103	Canola	nucleus	48.16	47.43
CDX96557	Canola	nucleus	48.16	47.15
CDX68173	Canola	nucleus	46.01	46.44
CDX85848	Canola	nucleus	46.01	46.3
CDY64733	Canola	nucleus	13.8	21.74
CDX95031	Canola	nucleus, plastid	8.9	18.71
CDY07778	Canola	nucleus	18.71	17.58
CDX74943	Canola	nucleus	19.33	17.21
CDX91374	Canola	nucleus	18.71	17.09
CDX79747	Canola	nucleus	18.1	16.95

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078I5L0	UniProt:A0A078I5L0	EnsemblPlants:CDY44428	ProteinID:CDY44428
ProteinID:CDY44428.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00080116001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF906	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EF2099	SEG:seg

Description

BnaA02g29490DBnaA02g29490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5L0]

Coordinates

chrLK032588:-:221954..223737

Molecular Weight (calculated)

36489.3 Da

IEP (calculated)

8.705

GRAVY (calculated)

-0.808

Length

326 amino acids

Sequence
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKAN QVSHQEHDQS RDRSSLSSSP SSSSANSNSN IARGQWERRL QTDIHLAKKA LSEALSPAVA PINTATTSSS TESRRSTSSA
201: SGFLRTQETS TTYASNTENI AKLLKGWVKK SPTQNSADQM VSPDSETKEV IKSNVEKDCA WAFQSFSGFD HLKDRDSAGV SPDHETKPDI TGYSNQSQWS
301: LFEKWLFEDS GGQVGDILLD ENPNFF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.