Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY58544 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G28910.1 | CDY58544 | AT3G03000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44428 | Canola | nucleus | 96.82 | 93.25 |
| CDX93535 | Canola | nucleus | 23.57 | 89.16 |
| AT3G28910.1 | Thale cress | nucleus | 87.26 | 84.83 |
| CDX95030 | Canola | nucleus | 30.57 | 84.21 |
| CDX86405 | Canola | nucleus | 89.17 | 84.08 |
| CDX86406 | Canola | nucleus | 88.85 | 83.78 |
| CDX85227 | Canola | nucleus | 88.53 | 83.48 |
| CDY00107 | Canola | nucleus | 87.26 | 81.07 |
| VIT_14s0108g00830.t01 | Wine grape | nucleus | 58.28 | 55.96 |
| VIT_17s0000g06190.t01 | Wine grape | nucleus | 53.5 | 54.72 |
| CDY30719 | Canola | nucleus | 46.5 | 54.48 |
| CDY00289 | Canola | nucleus | 47.77 | 54.15 |
| CDY16773 | Canola | nucleus | 50.32 | 53.56 |
| CDY69264 | Canola | nucleus | 55.41 | 52.41 |
| CDX87250 | Canola | nucleus | 55.73 | 52.24 |
| CDY31125 | Canola | nucleus | 42.99 | 50.94 |
| CDY32135 | Canola | nucleus | 42.99 | 50.56 |
| CDX73103 | Canola | nucleus | 49.36 | 46.83 |
| CDX96557 | Canola | nucleus | 49.36 | 46.55 |
| CDX68173 | Canola | nucleus | 47.13 | 45.82 |
| CDX85848 | Canola | nucleus | 47.13 | 45.68 |
| CDY64733 | Canola | nucleus | 13.69 | 20.77 |
| CDX95031 | Canola | nucleus, plastid | 8.92 | 18.06 |
| CDY07778 | Canola | nucleus | 19.43 | 17.58 |
| CDX91374 | Canola | nucleus | 19.75 | 17.37 |
| CDX74943 | Canola | nucleus | 20.06 | 17.21 |
| CDX79747 | Canola | nucleus | 18.79 | 16.95 |
Protein Annotations
| EnsemblPlants:CDY04044 | EnsemblPlantsGene:GSBRNA2T00117633001 | Gene3D:1.10.10.60 | GO:A0A078ETZ6 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF906 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY04044 | ProteinID:CDY04044.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF2ACD | MapMan:15.5.2.1 | : |
Description
BnaC02g37590D
Coordinates
chrLK031948:+:715509..717313
Molecular Weight (calculated)
34981.7 Da
IEP (calculated)
8.228
GRAVY (calculated)
-0.746
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRPPCCDKE GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKAN QVSHQEHDQS RDRSSLSSSP SSSSANSNSN INIARGQWER RLQTDIHLAK KALSEALSPA VAPINTATTS SSAESRLTTS
201: SASGIENIAK LLKGWVKKSP TQNSADQMVS PDSEAKEVIK SNVEKDCAGA FQSFSGFDHL KDRDSAGVSP DHETKPDITG YSNQSQWSLF EKWLFEDSGG
301: QVGDILLDEN PNFF
101: DNDIKNYWNT HLKKKLNKAN QVSHQEHDQS RDRSSLSSSP SSSSANSNSN INIARGQWER RLQTDIHLAK KALSEALSPA VAPINTATTS SSAESRLTTS
201: SASGIENIAK LLKGWVKKSP TQNSADQMVS PDSEAKEVIK SNVEKDCAGA FQSFSGFDHL KDRDSAGVSP DHETKPDITG YSNQSQWSLF EKWLFEDSGG
301: QVGDILLDEN PNFF
001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF
Arabidopsis Description
MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.