Factsheet for VIT_14s0108g00830.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0039g01880.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28910.1	VIT_16s0039g01880.t01	AT3G03000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06190.t01	Wine grape	nucleus	66.06	70.36
AT3G28910.1	Thale cress	nucleus	57.8	58.51
CDY04044	Canola	nucleus	55.96	58.28
Bra025361.1-P	Field mustard	nucleus	57.8	56.76
CDX86405	Canola	nucleus	57.49	56.46
CDX86406	Canola	nucleus	57.49	56.46
Bra033067.1-P	Field mustard	nucleus	56.27	56.44
CDY44428	Canola	nucleus	56.27	56.44
CDX85227	Canola	nucleus	57.19	56.16
CDY00107	Canola	nucleus	57.8	55.92
Bra039040.1-P	Field mustard	nucleus	56.88	55.03
VIT_08s0056g00800.t01	Wine grape	nucleus	47.71	48.6
VIT_08s0007g00410.t01	Wine grape	nucleus	23.85	21.79
VIT_14s0083g00120.t01	Wine grape	nucleus	23.55	20.05

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100257755	wikigene:100257755	MapMan:15.5.2.1	ProteinID:CCB47557	ProteinID:CCB47557.1
UniProt:F6H5T6	EMBL:FN595239	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100257755	wikigene:LOC100257755	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF902	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGR:TC57401	UniParc:UPI00015C9FAA
ArrayExpress:VIT_14s0108g00830	EnsemblPlantsGene:VIT_14s0108g00830	EnsemblPlants:VIT_14s0108g00830.t01	unigene:Vvi.3370	RefSeq:XP_002283575	RefSeq:XP_002283575.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:-:29512172..29513717

Molecular Weight (calculated)

36537.3 Da

IEP (calculated)

5.887

GRAVY (calculated)

-0.779

Length

327 amino acids

Sequence
(BLAST)

001: MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TDHEERMIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLKKLQ TGSSSDGHSR DVSLASQSIS RGQWERRLQT DIHMAKQALH EALSLEKPHS SSDQLNPTNG YQTCTRPGQA SSYASSTENI
201: ARLLEGWMRN SPKQARASSA TTQNSFINTA GTDSTSSEGT PSAANNEDIE LTEAYEMLFG FDSLDSSNSE ISQSKSPEAS FFQEESKPDL SDQVPLSFLE
301: KWLFEEGGAQ GKEDLTDISL DESPDFF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.