CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039040.1-P	Field mustard	nucleus	95.86	95.86
CDX86405	Canola	nucleus	87.87	89.19
CDX93535	Canola	nucleus	21.89	89.16
CDX86406	Canola	nucleus	87.57	88.89
CDX85227	Canola	nucleus	87.28	88.59
CDY44428	Canola	nucleus	85.21	88.34
CDY04044	Canola	nucleus	81.07	87.26
CDX95030	Canola	nucleus	28.4	84.21
VIT_14s0108g00830.t01	Wine grape	nucleus	55.92	57.8
VIT_17s0000g06190.t01	Wine grape	nucleus	50.89	56.03
CDY30719	Canola	nucleus	44.08	55.6
CDY00289	Canola	nucleus	45.56	55.6
CDY16773	Canola	nucleus	47.63	54.58
CDY69264	Canola	nucleus	52.37	53.31
CDX87250	Canola	nucleus	52.66	53.13
CDY31125	Canola	nucleus	41.42	52.83
CDY32135	Canola	nucleus	41.42	52.43
CDX96557	Canola	nucleus	48.52	49.25
CDX73103	Canola	nucleus	47.63	48.64
CDX68173	Canola	nucleus	45.86	47.99
CDX85848	Canola	nucleus	45.86	47.84
CDY64733	Canola	nucleus	14.5	23.67
CDX95031	Canola	nucleus, plastid	9.17	20.0
CDY07778	Canola	nucleus	18.64	18.16
CDX91374	Canola	nucleus	18.64	17.65
CDX79747	Canola	nucleus	18.05	17.53
CDX74943	Canola	nucleus	18.93	17.49

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078EG97	EnsemblPlants:CDY00107	ProteinID:CDY00107	ProteinID:CDY00107.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00109608001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF906	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EF22D9	SEG:seg

Description

BnaC09g01940D

Coordinates

chrLK031916:-:833979..835720

Molecular Weight (calculated)

37645.6 Da

IEP (calculated)

7.765

GRAVY (calculated)

-0.835

Length

338 amino acids

Sequence
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKAN QDSHQELDQS RDRSSLSSSP SSSSANSNSN IPRGQWERRL QTDIHLAKKA LSEALSPAVA PIVTSTLATT ATTSSSSESR
201: RSSSSTCGFL RAQETSTRYA SSTENIAKLL KGWVKTSPKT QNSADQKNPP DSETKEVMRS DDVQEDCAGG FQAFSGFDNS NDCDSPYHQT KLSPDHETKQ
301: DITGCSNQSQ LSLFEKWLFE DSGGQIGDIL LDENPNFF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.